CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1618907_x_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1618907_x_at CF202612.1 - - 4e+0 At5g17470 calmodulin-related protein, putative S.X. H.G.
0.80 93.6 1615753_at CF207576 - - 2e-11 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) S.X. H.G.
0.73 90.8 1616230_x_at CF202354.1 - - 2e+1 At5g43510 - S.X. H.G.
0.71 89.5 1614054_at CF206745.1 - - 4e-47 At2g27960 CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) S.X. H.G.
0.57 79.8 1609380_x_at CF203033.1 - - 8e-10 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) S.X. H.G.
0.50 72.7 1620380_x_at CF203025.1 - - 1e-1 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.7 99.8 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
12.2 99.8 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
10.1 99.6 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
10.0 99.6 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
9.6 99.6 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
9.5 99.6 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
9.3 99.6 GSM147730 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 59
9.1 99.5 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
8.5 99.4 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
8.4 99.4 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-23 105 1618031_s_at CF404451 hypothetical protein LOC100243967 - 2e-12 At1g79040 PSBR (photosystem II subunit R) C.G. S.X.
0.44 1e-21 99 1616230_x_at CF202354.1 - - 2e+1 At5g43510 - C.G. S.X.
0.18 8e-14 73 1615543_at CB341248 - - 2e+1 At5g51610 ribosomal protein L11 family protein C.G. S.X.
0.10 7e-5 44 1614377_at CB344123 - - 9e-1 At4g12900 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein C.G. S.X.
0.05 1e-3 40 1613701_at CF206488.1 - - 1e-13 At3g03250 UGP (UDP-glucose pyrophosphorylase) C.G. S.X.
0.04 7e-2 34 1620956_at CB349029 hypothetical protein LOC100264933 - 1e+0 At3g46230 ATHSP17.4 C.G. S.X.
0.10 7e-2 34 1610632_at CF208658 - - 2e+0 Atmg00690 - C.G. S.X.
0.05 3e-1 32 1620106_at CF511459 hypothetical protein LOC100262007 - 3e-7 At5g52820 WD-40 repeat family protein / notchless protein, putative C.G. S.X.
0.02 3e-1 32 1619491_s_at CF213714 hypothetical protein LOC100253896 - 2e-125 At5g17310 UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e+0 30 Arabidopsis thaliana At5g17470 831613 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB - - - C.G. S.X.
0.07 1e+0 32 Glycine max GmaAffx.55656.1.S1_at BM885552 - - 2e-1 At5g50720 ATHVA22E C.G. S.X.
0.08 4e-1 32 Hordeum vulgare HV_CEa0002A03r2_at HV_CEa0002A03r2 - - 8e+0 At4g23080 unknown protein C.G. S.X.
0.05 7e+0 30 Oryza sativa OsAffx.9330.1.S1_at - - - 0 C.G. S.X.
0.10 3e-1 34 Populus trichocarpa PtpAffx.212981.1.S1_at pmrna25389 - - 2e+0 At3g14880 - C.G. S.X.
0.06 4e+0 30 Triticum aestivum Ta.26237.1.A1_at CD453045 - - 4e+0 At2g36460 fructose-bisphosphate aldolase, putative C.G. S.X.
0.05 2e+0 30 Zea mays Zm.17434.1.A1_at CK347191 - - 9e-1 At5g01340 mitochondrial substrate carrier family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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