Gene omics information

Query gene ID	1618889_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	89.5	1618889_at	CB981513	-	-	2e-1	At4g08230	glycine-rich protein	S.X.	H.G.	Please select
0.59	80.6	1617712_at	CK138139.1	-	-	4e-4	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	S.X.	H.G.	Please select
0.55	77.3	1614517_x_at	CK138139.1	-	-	4e-4	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	S.X.	H.G.	Please select
0.44	64.1	1611086_at	CF415431	hypothetical protein LOC100249245	-	3e-13	At5g23940	EMB3009 (embryo defective 3009)	S.X.	H.G.	Please select
0.21	24.0	1616094_at	CF372451	MYBPA1 protein	-	5e-8	At1g18570	MYB51 (MYB DOMAIN PROTEIN 51)	S.X.	H.G.	Please select
0.15	15.6	1611378_at	CF606069	hypothetical protein LOC100244478	-	2e-8	At1g60630	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.14	14.4	1615295_at	CF373832	hypothetical protein LOC100259092	-	4e-1	At4g08190	Ras-related GTP-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	99.0	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
6.0	98.7	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.7	98.5	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.6	98.4	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
5.5	98.4	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.0	98.0	GSM436395	V. riparia (VR, PI588259) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.9	97.9	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.8	97.8	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.7	97.7	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.6	97.6	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	38	1620222_x_at	AJ237984.1	proline-rich cell wall protein-like /// ripening-induced protein 1-like	-	6e-1	Atcg00360	-	C.G.	S.X.	Please select
0.03	2e-2	38	1619680_at	CB975224	hypothetical protein LOC100254201	-	2e+0	At3g14480	glycine/proline-rich protein	C.G.	S.X.	Please select
0.02	2e-2	38	1615067_s_at	AJ237984.1	proline-rich cell wall protein-like /// ripening-induced protein 1-like	-	6e-1	Atcg00360	-	C.G.	S.X.	Please select
0.02	2e-2	38	1609846_a_at	AJ237984.1	proline-rich cell wall protein-like /// ripening-induced protein 1-like	-	6e-1	Atcg00360	-	C.G.	S.X.	Please select
0.02	7e-2	36	1622556_at	CB972747	hypothetical protein LOC100254279	-	6e-59	At1g73600	methyltransferase/ phosphoethanolamine N-methyltransferase	C.G.	S.X.	Please select
0.03	7e-2	36	1613050_at	CB971087	hypothetical protein LOC100248215	-	5e-4	At1g20470	auxin-responsive family protein	C.G.	S.X.	Please select
0.03	3e-1	34	1618515_s_at	CB344557	hypothetical protein LOC100254426	-	9e-24	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.04	3e-1	34	1618578_at	CF203270.1	-	-	5e-12	At3g05540	-	C.G.	S.X.	Please select
0.10	3e-1	34	1617526_s_at	CB972978	hypothetical protein LOC100250396	-	8e-1	At2g10920	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-1	36	Arabidopsis thaliana	At4g08230	826373	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	3e-1	36	Glycine max	GmaAffx.42047.1.S1_at	CD414277	-	-	1e+0	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	C.G.	S.X.	Please select
0.04	3e-2	38	Hordeum vulgare	EBem04_SQ003_P19_at	EBem04_SQ003_P19	-	-	3e+0	At1g76020	-	C.G.	S.X.	Please select
0.03	1e-1	38	Oryza sativa	Os01g0579800	AK111319.1	-	Hypothetical protein	3e-1	At2g34250	protein transport protein sec61, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	1e-3	44	Populus trichocarpa	PtpAffx.208205.1.S1_at	pmrna16326	hypothetical protein	-	1e-1	At1g29380	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	3e-1	36	Triticum aestivum	Ta.4324.1.A1_at	CA632253	-	-	2e+0	At3g16660	unknown protein	C.G.	S.X.	Please select
0.11	1e-1	36	Zea mays	Zm.11983.1.A1_at	BM382368	-	-	2e-1	At4g16240	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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