Gene omics information

Query gene ID	1618835_s_at
Gene name	hypothetical protein LOC100255405
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.87	95.2	1618835_s_at	BQ797163	hypothetical protein LOC100255405	-	2e-11	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select
0.93	99.2	1619917_s_at	CF518071	glutathione S-transferase	-	6e-2	At5g50830	unknown protein	S.X.	H.G.	Please select
0.89	95.5	1617940_at	CA809342	hypothetical protein LOC100266396	-	7e-8	At1g68290	ENDO 2 (endonuclease 2)	S.X.	H.G.	Please select
0.87	95.2	1614658_a_at	CF518071	glutathione S-transferase	-	6e-2	At5g50830	unknown protein	S.X.	H.G.	Please select
0.81	93.7	1616045_a_at	AJ237983.1	proline-rich cell wall protein-like	-	2e+0	At3g47180	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.77	92.3	1617171_s_at	AF000371.1	UDP glucose:flavonoid 3-o-glucosyltransferase	-	1e-2	At5g17030	UGT78D3 (UDP-GLUCOSYL TRANSFERASE 78D3)	S.X.	H.G.	Please select
0.73	90.8	1618296_s_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.73	90.8	1620959_s_at	CB915151	myb-relared transcription factor VvMYBA2	-	4e+0	At5g19855	unknown protein	S.X.	H.G.	Please select
0.70	88.6	1617756_at	CB981493	hypothetical protein LOC100253194	-	2e+1	At5g57560	TCH4 (Touch 4)	S.X.	H.G.	Please select
0.63	84.3	1608122_at	CB982493	hypothetical protein LOC100241637	-	4e-1	At4g36100	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.0	100.0	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
26.8	100.0	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
24.6	100.0	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
18.7	99.9	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
15.6	99.9	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
15.2	99.9	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.9	99.7	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
8.4	99.4	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
7.5	99.2	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.8	97.8	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	0	870	1620518_at	CF201341.1	-	-	9e-14	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.03	4e-1	34	1621877_at	CB922518	hypothetical protein LOC100241998	-	6e-6	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select
0.03	4e-1	34	1610211_at	CB922518	-	-	6e-6	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select
0.02	4e-1	34	1609502_at	CF372687	similar to GroEL-like chaperone, ATPase	-	3e-107	At3g23990	HSP60 (HEAT SHOCK PROTEIN 60)	C.G.	S.X.	Please select
0.02	2e+0	32	1622234_s_at	CA814443	hypothetical protein LOC100246811	-	2e-46	At3g02230	RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1611401_at	CB920876	-	-	3e-2	At3g14160	oxidoreductase	C.G.	S.X.	Please select
0.02	2e+0	32	1609487_at	CF204351.1	hypothetical protein LOC100246811	-	1e-41	At5g15650	RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2)	C.G.	S.X.	Please select
0.02	2e+0	32	1607618_at	CB920876	hypothetical protein LOC100263508	-	3e-2	At3g14160	oxidoreductase	C.G.	S.X.	Please select
0.02	2e+0	32	1606693_at	CF510824	hypothetical protein LOC100265371	-	3e-43	At5g05670	signal recognition particle binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-11	69	Arabidopsis thaliana	At3g04720	819632	PR4 (PATHOGENESIS-RELATED 4)	Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	8e-6	52	Glycine max	GmaAffx.92499.1.S1_s_at	CF809203	Win gene encoding wound-induced protein	-	2e-15	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.09	2e-4	46	Hordeum vulgare	Contig2550_x_at	Contig2550	pathogenesis-related protein 4	-	4e-4	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.13	5e-11	69	Oryza sativa	Os11g0592200	AY050642.1	-	Barwin domain containing protein	8e-2	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.29	2e-9	63	Populus trichocarpa	PtpAffx.222696.1.S1_at	pmrna40265	hypothetical protein	-	4e+0	At5g61640	PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	4e-7	56	Triticum aestivum	TaAffx.116570.1.S1_x_at	AL825027	-	-	2e-8	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.02	9e+0	30	Zea mays	Zm.8949.1.A1_at	BM338467	hypothetical protein LOC100274863	-	5e-1	At4g20420	tapetum-specific protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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