Gene omics information

Query gene ID	1618792_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	84.3	1618792_at	CB348194	-	-	1e-37	At1g61250	SC3 (SECRETORY CARRIER 3)	S.X.	H.G.	Please select
0.73	90.8	1618690_at	CF207597	hypothetical protein LOC100259195	-	3e-16	At1g20110	zinc finger (FYVE type) family protein	S.X.	H.G.	Please select
0.72	89.7	1613706_at	CA808981	hypothetical protein LOC100258971	-	2e-15	At4g38930	ubiquitin fusion degradation UFD1 family protein	S.X.	H.G.	Please select
0.67	87.9	1617903_at	CF207014.1	hypothetical protein LOC100266203	-	7e+0	At5g54850	unknown protein	S.X.	H.G.	Please select
0.67	87.9	1614009_at	BQ797920	hypothetical protein LOC100242045	-	4e-19	At1g14000	VIK (VH1-INTERACTING KINASE)	S.X.	H.G.	Please select
0.56	79.4	1607761_at	CB974335	hypothetical protein LOC100247652	-	9e-5	At1g56460	PAPA-1-like family protein / zinc finger (HIT type) family protein	S.X.	H.G.	Please select
0.54	75.7	1618130_at	CF511795	hypothetical protein LOC100261654	-	1e+0	At5g23040	CDF1 (CELL GROWTH DEFECT FACTOR 1)	S.X.	H.G.	Please select
0.50	72.7	1619759_at	CA814682	hypothetical protein LOC100253701	-	5e-29	At2g41530	SFGH (S-FORMYLGLUTATHIONE HYDROLASE)	S.X.	H.G.	Please select
0.49	69.3	1611412_at	CF517248	hypothetical protein LOC100244694	-	2e+0	At5g37480	unknown protein	S.X.	H.G.	Please select
0.47	67.7	1622518_at	CF514125	hypothetical protein LOC100255499	-	1e+0	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.7	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.4	91.3	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
1.9	87.2	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	3e-60	230	1612790_at	CF608251	hypothetical protein LOC100243027	-	1e-17	At1g61250	SC3 (SECRETORY CARRIER 3)	C.G.	S.X.	Please select
0.02	2e-2	38	1608517_at	CF518589	hypothetical protein LOC100263874	-	1e-1	At2g30590	WRKY21	C.G.	S.X.	Please select
0.01	1e-1	36	1608442_at	AF177590.1	ornithine aminotransferase	-	8e-60	At5g46180	delta-OAT	C.G.	S.X.	Please select
0.02	4e-1	34	1616284_at	CF207496	hypothetical protein LOC100250368	-	1e-44	At5g03430	phosphoadenosine phosphosulfate (PAPS) reductase family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1607710_at	CF213883	hypothetical protein LOC100257507	-	2e-3	At1g31940	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1618168_s_at	CA809565	hypothetical protein LOC100266379	-	4e-7	At2g18020	EMB2296 (embryo defective 2296)	C.G.	S.X.	Please select
0.03	2e+0	32	1616471_at	CF369074	-	-	3e+0	At1g50290	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1610405_at	CF405153	hypothetical protein LOC100246118	-	1e-20	At3g54950	PLA IIIA (PATATIN-LIKE PROTEIN 6)	C.G.	S.X.	Please select
0.02	2e+0	32	1606942_at	CA809565	hypothetical protein LOC100266379	-	4e-7	At2g18020	EMB2296 (embryo defective 2296)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	1e-37	157	Arabidopsis thaliana	At1g61250	842418	SC3 (SECRETORY CARRIER 3)	Encodes a putative secretory carrier membrane protein (SC3).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	4e-60	232	Glycine max	Gma.4485.1.S1_at	BE347874	-	-	8e-13	At1g61250	SC3 (SECRETORY CARRIER 3)	C.G.	S.X.	Please select
0.11	7e-7	54	Hordeum vulgare	Contig14345_s_at	Contig14345	-	-	2e-8	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.10	1e-29	131	Oryza sativa	Os07g0564600	AK102110.1	-	Secretory carrier membrane protein	9e-13	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	1e-29	131	Populus trichocarpa	PtpAffx.136305.1.S1_at	CF227968	hypothetical protein	-	3e-22	At1g11180	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	3e-17	89	Triticum aestivum	Ta.3646.2.S1_a_at	BJ221454	-	-	3e-13	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.15	1e-7	56	Zea mays	Zm.12757.1.A1_at	CA398294	-	-	2e-9	At1g61250	SC3 (SECRETORY CARRIER 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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