CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1618759_at

Gene name hypothetical protein LOC100256813

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1618759_at CB348270 hypothetical protein LOC100256813 - 1e+0 At1g76010 nucleic acid binding S.X. H.G.
0.55 77.3 1611632_at CB346860 similar to SUS2 (ABNORMAL SUSPENSOR 2) - 2e-87 At4g38780 splicing factor, putative S.X. H.G.
0.44 64.1 1615804_at CF403733 - - 4e-2 At5g65910 BSD domain-containing protein S.X. H.G.
0.31 41.3 1619715_at CF207152 hypothetical protein LOC100243011 - 5e-39 At1g30470 SIT4 phosphatase-associated family protein S.X. H.G.
0.22 25.6 1614009_at BQ797920 hypothetical protein LOC100242045 - 4e-19 At1g14000 VIK (VH1-INTERACTING KINASE) S.X. H.G.
0.16 16.7 1607119_at CD799254 hypothetical protein LOC100247980 - 6e-71 At1g78920 AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.0 94.2 GSM436370 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436371 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
1.9 87.2 GSM147718 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 47
1.9 87.2 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-2 36 1612494_at CB969403 hypothetical protein LOC100263941 - 3e-3 At5g05990 mitochondrial glycoprotein family protein / MAM33 family protein C.G. S.X.
0.02 3e-1 34 1611764_at CF511297 hypothetical protein LOC100254115 - 1e-1 At3g01220 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20) C.G. S.X.
0.03 1e+0 32 1622726_at CF515466 - - 4e+0 At2g45200 GOS12 (GOLGI SNARE 12) C.G. S.X.
0.03 1e+0 32 1622628_at CB349013 hypothetical protein LOC100244609 - 3e-2 At1g54050 17.4 kDa class III heat shock protein (HSP17.4-CIII) C.G. S.X.
0.03 1e+0 32 1622425_at CB971457 similar to TIP1 (TIP GROWTH DEFECTIVE 1) - 2e-5 At5g20350 TIP1 (TIP GROWTH DEFECTIVE 1) C.G. S.X.
0.02 1e+0 32 1621387_at CF205671.1 - - 6e-29 At5g47570 unknown protein C.G. S.X.
0.03 1e+0 32 1618734_at CB001898 - - 1e+0 At5g11740 AGP15 (ARABINOGALACTAN PROTEIN 15) C.G. S.X.
0.03 1e+0 32 1614111_at CB001898 - - 1e+0 At5g11740 AGP15 (ARABINOGALACTAN PROTEIN 15) C.G. S.X.
0.02 1e+0 32 1613336_at CB980198 hypothetical protein LOC100267659 - 1e-26 At1g75510 transcription initiation factor IIF beta subunit (TFIIF-beta) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At1g76010 843932 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA - - - C.G. S.X.
0.03 9e-2 38 Glycine max Gma.2939.1.S1_at AW349934 - - 5e-3 At3g57930 unknown protein C.G. S.X.
0.03 8e-3 40 Hordeum vulgare Contig10730_at Contig10730 - - 9e-2 At1g25425 CLE43 (CLAVATA3/ESR-RELATED 43) C.G. S.X.
0.03 5e-1 36 Oryza sativa Os02g0287200 9634.m02893 - - 1e+0 At1g08830 CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) C.G. S.X.
0.15 6e-3 42 Populus trichocarpa PtpAffx.13767.1.S1_at BU870339 - - 3e-1 At3g22275 unknown protein C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.112296.1.S1_at CA625138 - - 8e-1 At5g57570 - C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.1449.1.S1_at 40794996-6 - - 1e+0 At3g32090 transcription factor-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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