CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1618712_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.42 60.1 1618712_at CB003306 - - 3e-1 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) S.X. H.G.
0.61 83.2 1614154_at CF568802 - - 7e-8 At1g72440 EDA25 (embryo sac development arrest 25) S.X. H.G.
0.46 66.5 1608135_at CF206119.1 - - 1e+0 At2g47650 UXS4 (UDP-XYLOSE SYNTHASE 4) S.X. H.G.
0.40 57.7 1610470_at CF202637.1 - - 1e-7 At5g15150 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) S.X. H.G.
0.40 57.7 1617917_at CF405637 - - 4e+0 At1g53100 acetylglucosaminyltransferase S.X. H.G.
0.33 45.7 1615204_at CF371804 - - 1e+0 At3g21580 cobalt ion transmembrane transporter S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 98.2 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.8 96.4 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
3.5 95.7 GSM436369 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.2 94.9 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.91 0 1154 1614914_at CB003306 - - 3e-1 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) C.G. S.X.
0.20 5e-31 133 1611923_at CA817577 - - 3e-1 At5g63740 zinc finger protein-related C.G. S.X.
0.28 3e-29 127 1613010_at CF403543 - - 4e+0 At4g21890 unknown protein C.G. S.X.
0.13 8e-27 119 1613712_at CF403703 hypothetical protein LOC100248230 - 3e-9 At2g37478 CPuORF52 (Conserved peptide upstream open reading frame 52) C.G. S.X.
0.11 7e-21 99 1611054_at CF516017 - - 4e+0 Atmg01290 - C.G. S.X.
0.22 7e-18 89 1616217_at CB003366 - - 5e+0 At4g13830 J20 (DNAJ-LIKE 20) C.G. S.X.
0.22 7e-18 89 1612410_at CB003366 - - 5e+0 At4g13830 J20 (DNAJ-LIKE 20) C.G. S.X.
0.11 4e-13 73 1613989_at CF414043 - - 7e-1 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) C.G. S.X.
0.04 2e-8 57 1617822_at CB976807 - - 1e-42 At3g46010 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At4g21330 827883 DYT1 (DYSFUNCTIONAL TAPETUM 1) Encodes a bHLH transcription factor strongly expressed in the tapetum from late anther stage 5 to early stage 6, and at a lower level in meiocytes. dyt1 mutant exhibits abnormal anther morphology beginning at anther stage 4. DYT1 acts downstream of SPL/NZZ and EMS1/EXS , and is required for normal expression of AMS, MS1 and other tapetum preferential genes. - - - C.G. S.X.
0.04 4e-1 36 Glycine max Gma.12644.1.A1_at CD393541 - - 3e+0 At4g18501 unknown protein C.G. S.X.
0.03 6e-1 34 Hordeum vulgare HS07P13u_s_at HS07P13u - - 5e-5 At3g16780 60S ribosomal protein L19 (RPL19B) C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.9093.1.S1_at - - - 0 C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.40315.1.S1_at BU891653 - - 9e+0 At5g28310 oxidoreductase-related C.G. S.X.
0.04 1e+0 34 Triticum aestivum Ta.8753.1.A1_at BQ162326 - - 3e+0 At5g03050 unknown protein C.G. S.X.
0.02 2e+0 32 Zea mays Zm.9712.1.A1_at BM336467 - - 9e-2 At5g25810 tny (TINY) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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