CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1618682_at

Gene name hypothetical protein LOC100255284

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 90.8 1618682_at CA814693 hypothetical protein LOC100255284 - 5e-5 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) S.X. H.G.
0.67 87.9 1620255_at CF204030.1 hypothetical protein LOC100246301 - 2e-12 At1g30220 INT2 (INOSITOL TRANSPORTER 2) S.X. H.G.
0.67 87.9 1616294_s_at CD802397 hypothetical LOC100256580 - 4e-5 At4g25434 ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10) S.X. H.G.
0.50 72.7 1621746_at CD003963 hypothetical protein LOC100261012 - 4e-4 At5g64230 unknown protein S.X. H.G.
0.36 50.7 1616798_s_at CB009035 hypothetical protein LOC100246301 - 3e-15 At1g30220 INT2 (INOSITOL TRANSPORTER 2) S.X. H.G.
0.16 16.7 1609135_at CF207623 - - 1e+0 At5g56060 ATP binding / nucleotide binding / phenylalanine-tRNA ligase S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.0 99.8 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.3 99.6 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.5 98.9 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.2 98.8 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
6.0 98.7 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.4 98.3 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
5.3 98.2 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
5.1 98.1 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.9 97.9 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.5 97.5 GSM147733 Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation 62
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.96 0 2325 1608136_s_at CA814693 hypothetical protein LOC100255284 - 5e-5 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
0.39 0 656 1609925_at CF203692.1 - - 2e-2 At2g30080 ZIP6 C.G. S.X.
0.11 3e-19 95 1615669_at BQ798569 hypothetical protein LOC100250979 - 2e-2 At3g12750 ZIP1 (ZINC TRANSPORTER 1 PRECURSOR) C.G. S.X.
0.02 5e-2 38 1621577_s_at CF209177 hypothetical protein LOC100252109 - 1e-78 At5g47540 binding C.G. S.X.
0.02 5e-2 38 1613604_at CK138243.1 - - 1e-37 At5g47540 binding C.G. S.X.
0.02 2e-1 36 1615261_at CF213090 hypothetical protein LOC100254421 - 2e-8 At3g54110 PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1) C.G. S.X.
0.02 8e-1 34 1617863_at CA817296 hypothetical protein LOC100258796 - 4e-4 At5g20220 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.02 8e-1 34 1616879_at CF512295 similar to armadillo/beta-catenin repeat family protein - 4e+0 At5g14360 ubiquitin family protein C.G. S.X.
0.01 3e+0 32 1621974_at CB971118 hypothetical protein LOC100262951 - 6e-1 At3g57750 protein kinase, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-5 50 Arabidopsis thaliana At5g62160 836336 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) member of Fe(II) transporter isolog family - - - C.G. S.X.
0.17 2e-8 61 Glycine max GmaAffx.42583.1.A1_at BG154898 - - 2e-12 At3g12750 ZIP1 (ZINC TRANSPORTER 1 PRECURSOR) C.G. S.X.
0.06 6e-9 61 Hordeum vulgare Contig26252_at Contig26252 - - 1e+0 At4g19680 IRT2 C.G. S.X.
0.08 9e-2 40 Oryza sativa Os04g0613000 AY323915.1 - Zinc transporter 1 precursor (ZRT/IRT-like protein1) 1e-2 At2g32270 ZIP3 C.G. S.X.
0.34 2e-20 101 Populus trichocarpa PtpAffx.205944.1.S1_s_at pmrna11796 ZIP transporter /// ZIP transporter /// ZIP transporter - 5e-10 At3g12750 ZIP1 (ZINC TRANSPORTER 1 PRECURSOR) C.G. S.X.
0.08 2e-10 67 Triticum aestivum TaAffx.106421.1.S1_at CD933478 zinc transporter ZIP - 3e+0 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) C.G. S.X.
0.02 5e+0 32 Zea mays Zm.985.1.A1_at BE638902 esterase/lipase/thioesterase - 5e+0 At4g33610 glycine-rich protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage