Gene omics information

Query gene ID	1618681_at
Gene name	hypothetical protein LOC100241923
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	79.8	1618681_at	BQ797518	hypothetical protein LOC100241923	-	1e-30	At1g49760	PAB8 (POLY(A) BINDING PROTEIN 8)	S.X.	H.G.	Please select
0.67	87.9	1614871_s_at	CF404051	hypothetical protein LOC100266189	-	7e-5	At4g32551	LUG (LEUNIG)	S.X.	H.G.	Please select
0.67	87.9	1608241_at	CD798818	hypothetical protein LOC100251333	-	1e-15	At5g06000	EIF3G2	S.X.	H.G.	Please select
0.57	79.8	1607079_at	BQ797339	hypothetical protein LOC100263131	-	2e+0	At3g56490	zinc-binding protein, putative / protein kinase C inhibitor, putative	S.X.	H.G.	Please select
0.57	79.8	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.55	77.3	1617194_at	BQ794485	hypothetical protein LOC100264514	-	5e-1	At5g37520	unknown protein	S.X.	H.G.	Please select
0.50	72.7	1606542_at	BQ797856	hypothetical protein LOC100250325	-	1e+0	At2g10450	14-3-3 protein, putative / grf15, putative	S.X.	H.G.	Please select
0.50	72.7	1610845_at	CF208629	hypothetical protein LOC100245365	-	2e+0	At1g68030	PHD finger protein-related	S.X.	H.G.	Please select
0.42	60.1	1606671_at	CA809598	hypothetical protein LOC100262399	-	3e-21	At4g31580	SRZ-22	S.X.	H.G.	Please select
0.35	48.5	1617329_at	BQ798056	hypothetical protein LOC100255368	-	5e-49	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.9	93.8	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436384	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	2e-66	252	1607500_at	CB972788	hypothetical protein LOC100262903	-	3e-23	At2g23350	PAB4 (POLY(A) BINDING PROTEIN 4)	C.G.	S.X.	Please select
0.05	5e-18	91	1615950_s_at	CF371996	-	-	4e-1	At1g14060	-	C.G.	S.X.	Please select
0.04	1e-3	44	1621519_at	CD721078	-	-	5e+0	At5g05987	PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2)	C.G.	S.X.	Please select
0.04	1e-3	44	1608925_at	CD721078	-	-	5e+0	At5g05987	PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2)	C.G.	S.X.	Please select
0.02	6e-2	38	1615622_at	CB339248	-	-	4e-43	At4g21990	APR3 (APS REDUCTASE 3)	C.G.	S.X.	Please select
0.01	9e-1	34	1622231_at	AF467945.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.01	9e-1	34	1620454_s_at	AF467946.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	C.G.	S.X.	Please select
0.01	9e-1	34	1617068_at	CF519166	hypothetical protein LOC100246568	-	8e-12	At1g10760	SEX1 (STARCH EXCESS 1)	C.G.	S.X.	Please select
0.01	9e-1	34	1615211_at	BQ797462	hypothetical protein LOC100267901	-	3e-8	At2g26280	CID7	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	1e-30	135	Arabidopsis thaliana	At1g49760	841399	PAB8 (POLY(A) BINDING PROTEIN 8)	polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.48	4e-68	260	Glycine max	Gma.16632.1.S1_a_at	BM886453	-	-	4e-19	At4g34110	PAB2 (POLY(A) BINDING 2)	C.G.	S.X.	Please select
0.19	7e-18	91	Hordeum vulgare	Contig3143_at	Contig3143	-	-	2e-5	At2g23350	PAB4 (POLY(A) BINDING PROTEIN 4)	C.G.	S.X.	Please select
0.18	5e-13	77	Oryza sativa	Os08g0314800	AK065167.1	-	Poly(A)-binding protein	2e-20	At4g34110	PAB2 (POLY(A) BINDING 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.45	2e-141	504	Populus trichocarpa	PtpAffx.9792.1.S1_s_at	BP930774	hypothetical protein	-	7e-24	At1g49760	PAB8 (POLY(A) BINDING PROTEIN 8)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	2e-38	161	Triticum aestivum	TaAffx.106744.1.S1_at	CA712487	-	-	2e-8	At4g34110	PAB2 (POLY(A) BINDING 2)	C.G.	S.X.	Please select
0.20	4e-10	65	Zea mays	Zm.5650.1.S1_at	CF631308	polyadenylate-binding protein 2	-	9e-5	At2g23350	PAB4 (POLY(A) BINDING PROTEIN 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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