Gene omics information

Query gene ID	1618679_s_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1618679_s_at	CB343106	-	-	4e-83	Atcg00280	-	S.X.	H.G.	Please select
0.77	92.3	1609916_s_at	CD005933	hypothetical protein LOC100266722	-	0	Atcg00120	-	S.X.	H.G.	Please select
0.67	87.9	1621593_s_at	AF347624.1	-	-	2e+0	At2g31083	CLE5 (CLAVATA3/ESR-RELATED 5)	S.X.	H.G.	Please select
0.67	87.9	1612357_s_at	CF203581.1	-	-	4e+0	At5g66240	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.61	83.2	1607106_s_at	CD720969	similar to Os06g0598500	-	0	Atcg00490	-	S.X.	H.G.	Please select
0.50	72.7	1607877_x_at	CF202836.1	-	-	3e+1	Atcg01250	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.8	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
6.3	98.8	GSM147736	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	65
6.1	98.7	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
6.1	98.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
6.0	98.7	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
5.7	98.5	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
5.6	98.4	GSM147713	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	42
5.6	98.4	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
5.5	98.4	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62
5.5	98.4	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	34	1609070_a_at	CF372037	hypothetical protein LOC100266501	-	1e+0	At5g55870	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1618732_at	BQ792959	-	-	2e-8	At3g49140	-	C.G.	S.X.	Please select
0.04	5e+0	30	1616315_s_at	CB970362	hypothetical protein LOC100254003	-	3e-16	At1g20330	SMT2 (STEROL METHYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.03	5e+0	30	1614248_at	CF214410	-	-	2e-1	At1g09250	transcription factor	C.G.	S.X.	Please select
0.02	5e+0	30	1613920_at	CB979957	hypothetical protein LOC100260935	-	2e+0	At1g07830	ribosomal protein L29 family protein	C.G.	S.X.	Please select
0.03	5e+0	30	1609538_at	CF512947	-	-	1e+0	At2g40020	-	C.G.	S.X.	Please select
0.02	2e+1	28	1622179_at	CB003646	-	-	3e-1	At3g28610	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	C.G.	S.X.	Please select
0.02	2e+1	28	1621879_at	CF215292	hypothetical protein LOC100244617	-	5e+0	At5g45350	proline-rich family protein	C.G.	S.X.	Please select
0.02	2e+1	28	1621288_at	CB972014	hypothetical protein LOC100252015	-	2e+0	At5g50030	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	4e-83	307	Arabidopsis thaliana	Atcg00280	-	-	chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.27056.1.S1_at	BG154596	-	-	3e+0	At3g23220	DNA binding / transcription factor	C.G.	S.X.	Please select
0.45	4e-69	260	Hordeum vulgare	ChlorContig14_at	ChlorContig14	-	-	4e-157	Atcg00280	-	C.G.	S.X.	Please select
0.33	2e-65	250	Oryza sativa	OsAffx.30473.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	3e-69	262	Populus trichocarpa	PtpAffx.225549.1.S1_s_at	pmrna44977	hypothetical protein	-	0	Atcg00280	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	2e-73	276	Triticum aestivum	TaAffx.128712.2.S1_s_at	CA674993	Photosystem II CP43 chlorophyll apoprotein	-	0	Atcg00280	-	C.G.	S.X.	Please select
0.36	3e-76	284	Zea mays	ZmAffx.1443.1.S1_at	11990232-7	-	-	0	Atcg00280	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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