CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1618611_at

Gene name hypothetical protein LOC100261588

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.5 1618611_at CB971624 hypothetical protein LOC100261588 - 6e-13 At4g37740 AtGRF2 (GROWTHREGULATING FACTOR 2) S.X. H.G.
0.77 92.3 1611070_at CF372775 hypothetical protein LOC100253609 - 6e+0 At5g28640 AN3 (ANGUSTIFOLIA 3) S.X. H.G.
0.57 79.8 1619071_at CF413991 hypothetical protein LOC100259877 - 7e-1 At1g51330 serpin-related / serine protease inhibitor-related S.X. H.G.
0.35 48.5 1614723_at CF373226 hypothetical protein LOC100259737 - 4e-1 At5g62060 F-box family protein S.X. H.G.
0.25 30.5 1621867_at CF516530 - - 5e-2 At5g66000 unknown protein S.X. H.G.
0.14 14.4 1617526_s_at CB972978 hypothetical protein LOC100250396 - 8e-1 At2g10920 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.9 99.5 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
6.4 98.9 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.9 98.6 GSM436400 V. riparia (VR, PI588259) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.8 98.6 GSM436401 V. riparia (VR, PI588259) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.3 98.2 GSM436402 V. riparia (VR, PI588259) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.5 97.5 GSM436386 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436422 V. riparia (VR, PI588259) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM436385 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 4e-8 57 1617907_at CB346218 hypothetical protein LOC100242152 - 9e-8 At2g45480 AtGRF9 (GROWTH-REGULATING FACTOR 9) C.G. S.X.
0.02 4e-2 38 1618405_at BQ792473 hypothetical protein LOC100243662 - 4e-23 At1g21870 glucose-6-phosphate/phosphate translocator-related C.G. S.X.
0.01 6e-1 34 1613074_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) C.G. S.X.
0.01 6e-1 34 1611748_s_at CB969590 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) C.G. S.X.
0.01 2e+0 32 1621982_s_at BQ794582 hypothetical protein LOC100265955 - 1e-14 At1g51410 cinnamyl-alcohol dehydrogenase, putative (CAD) C.G. S.X.
0.02 2e+0 32 1621629_at CF513381 hypothetical protein LOC100246599 - 3e-20 At5g35160 - C.G. S.X.
0.02 2e+0 32 1618356_a_at CD800731 hypothetical protein LOC100266630 /// hypothetical protein LOC100267614 - 6e-9 At3g10330 transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) C.G. S.X.
0.01 2e+0 32 1616500_at AF194175.1 alcohol dehydrogenase 3 - 7e-26 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) C.G. S.X.
0.02 2e+0 32 1615100_at CD800731 - - 6e-9 At3g10330 transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 6e-13 75 Arabidopsis thaliana At4g37740 829930 AtGRF2 (GROWTHREGULATING FACTOR 2) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower - - - C.G. S.X.
0.08 3e-6 54 Glycine max Gma.11947.1.S1_at BE473573 - - 1e-5 At3g13960 AtGRF5 (GROWTH-REGULATING FACTOR 5) C.G. S.X.
0.05 6e-2 38 Hordeum vulgare Contig14163_at Contig14163 - - 8e-12 At2g36400 AtGRF3 (GROWTH-REGULATING FACTOR 3) C.G. S.X.
0.06 3e-4 48 Oryza sativa OsAffx.19891.1.S1_at - - - 0 C.G. S.X.
0.18 3e-31 137 Populus trichocarpa PtpAffx.224871.1.S1_at pmrna43763 hypothetical protein - 3e-15 At2g45480 AtGRF9 (GROWTH-REGULATING FACTOR 9) C.G. S.X.
0.04 5e-1 36 Triticum aestivum TaAffx.121733.1.S1_at BJ316403 - - 2e-3 At3g52910 AtGRF4 (GROWTH-REGULATING FACTOR 4) C.G. S.X.
0.04 1e-5 50 Zea mays Zm.2746.1.A1_at AW067062 growth-regulating factor 5-like - 9e-20 At2g36400 AtGRF3 (GROWTH-REGULATING FACTOR 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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