Gene omics information

Query gene ID	1618578_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	90.8	1618578_at	CF203270.1	-	-	5e-12	At3g05540	-	S.X.	H.G.	Please select
0.73	90.8	1617796_at	CB981703	hypothetical protein LOC100260883	-	1e-1	At3g55420	unknown protein	S.X.	H.G.	Please select
0.64	84.7	1621590_at	CF203585.1	-	-	9e-2	At1g10140	-	S.X.	H.G.	Please select
0.51	73.2	1618737_x_at	CF202021.1	-	-	1e+0	At4g09650	ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE)	S.X.	H.G.	Please select
0.50	72.7	1618897_at	CF405080	hypothetical protein LOC100242888	-	3e-1	At4g10920	KELP	S.X.	H.G.	Please select
0.49	69.3	1621486_at	CB970356	-	-	2e+0	At5g50840	-	S.X.	H.G.	Please select
0.47	67.7	1610347_s_at	CF202826.1	similar to NADH dehydrogenase subunit I	-	2e+0	At1g35430	unknown protein	S.X.	H.G.	Please select
0.44	64.1	1609320_x_at	CF202708.1	-	-	2e-1	At4g28703	-	S.X.	H.G.	Please select
0.42	60.1	1611279_s_at	CB343789	-	-	0	Atcg01010	-	S.X.	H.G.	Please select
0.41	58.7	1606749_s_at	CF519168	hypothetical protein LOC100245228	-	2e-22	At5g54290	cytochrome c biogenesis protein family	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.2	99.8	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
8.4	99.4	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
8.1	99.4	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
7.9	99.3	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
7.4	99.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
5.8	98.6	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
5.5	98.4	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
5.1	98.1	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
5.1	98.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
4.9	97.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.76	0	977	1618515_s_at	CB344557	hypothetical protein LOC100254426	-	9e-24	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.30	1e-44	178	1620870_s_at	BQ794210	hypothetical protein LOC100251175	-	3e-18	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.30	1e-44	178	1609433_s_at	CA807981	similar to Os03g0576600	-	3e-18	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.22	4e-13	73	1620798_s_at	BQ800340	hypothetical protein LOC100251175	-	1e-5	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.04	4e-1	34	1618889_at	CB981513	-	-	2e-1	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.01	4e-1	34	1613353_at	CA809236	hypothetical protein LOC100265492	-	4e-86	At4g01370	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)	C.G.	S.X.	Please select
0.02	1e+0	32	1622223_at	BQ794199	hypothetical protein LOC100264264	-	1e-11	At1g67325	binding / zinc ion binding	C.G.	S.X.	Please select
0.03	1e+0	32	1610795_at	CA817716	-	-	5e+0	Atmg00516	-	C.G.	S.X.	Please select
0.01	1e+0	32	1607144_at	CB971726	similar to plasma membrane H+ ATPase	-	1e-175	At3g47950	AHA4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	5e-12	71	Arabidopsis thaliana	At3g05540	819719	-	F:unknown;P:biological_process unknown;C:cytoplasm;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	4e-26	119	Glycine max	GmaAffx.33954.1.S1_at	AW568231	-	-	2e-14	At3g05540	-	C.G.	S.X.	Please select
0.09	6e-10	63	Hordeum vulgare	Contig97_s_at	Contig97	translationally-controlled tumor protein homolog	-	2e-8	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.12	2e-3	44	Oryza sativa	Os.6.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	2e-3	44	Populus trichocarpa	PtpAffx.37555.1.A1_at	CV246488	hypothetical protein	-	2e-13	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	2e-5	50	Triticum aestivum	TaAffx.104970.1.S1_at	CA742074	-	-	8e-4	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select
0.10	1e-10	65	Zea mays	Zm.871.2.A1_a_at	CF637006	-	-	1e-3	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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