CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1618561_at

Gene name hypothetical protein LOC100246875

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1618561_at CF204500.1 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.91 98.8 1622012_at CF204966.1 - - 2e-2 At1g62760 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.83 94.6 1606429_at CF373019 hypothetical protein LOC100251832 - 2e-1 At4g12390 PME1 (PECTIN METHYLESTERASE INHIBITOR 1) S.X. H.G.
0.83 94.6 1621244_s_at CD797552 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.77 92.3 1617334_s_at CF607954 - - 1e-9 At5g65660 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.71 89.5 1616735_at CF604749 hypothetical protein LOC100257315 - 1e+0 At5g50470 NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.4 100.0 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
23.5 100.0 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
22.5 100.0 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
20.2 99.9 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
17.4 99.9 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
14.9 99.9 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
14.3 99.9 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.9 99.8 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.2 99.8 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
11.3 99.7 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 0 674 1621244_s_at CD797552 hypothetical protein LOC100246875 - 2e-5 At3g03980 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.02 4e-1 34 1619594_at CB970876 hypothetical protein LOC100265051 - 2e-25 At4g10380 NIP5 C.G. S.X.
0.03 4e-1 34 1617454_at BQ798893 hypothetical protein LOC100261773 - 3e+0 At3g10700 GHMP kinase family protein C.G. S.X.
0.02 4e-1 34 1611010_at CF214416 hypothetical protein LOC100250144 - 2e-6 At4g26410 - C.G. S.X.
0.03 2e+0 32 1619245_at CD719586 hypothetical protein LOC100262100 - 6e-6 At1g27510 - C.G. S.X.
0.02 2e+0 32 1618152_at CB008600 - - 3e-24 At1g74210 glycerophosphoryl diester phosphodiesterase family protein C.G. S.X.
0.02 2e+0 32 1615220_at CB340728 hypothetical protein LOC100262100 - 2e-10 At1g27510 - C.G. S.X.
0.02 2e+0 32 1614375_at CB008600 hypothetical protein LOC100260480 - 3e-24 At1g74210 glycerophosphoryl diester phosphodiesterase family protein C.G. S.X.
0.02 2e+0 32 1613440_at CB976741 hypothetical protein LOC100252018 - 4e-10 At1g53450 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-5 50 Arabidopsis thaliana At3g03980 819553 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV - - - C.G. S.X.
0.06 2e-3 44 Glycine max GmaAffx.93030.1.S1_s_at CF808755 - - 9e-2 At5g18210 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.07 4e-2 38 Hordeum vulgare Contig23929_at Contig23929 - - 3e+0 At4g01850 SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) C.G. S.X.
0.02 7e-1 36 Oryza sativa OsAffx.16135.1.S1_x_at - - - 0 C.G. S.X.
0.09 2e-6 54 Populus trichocarpa Ptp.7160.2.A1_a_at CV239819 hypothetical protein - 1e+0 At3g04000 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.05 2e+0 34 Triticum aestivum Ta.11888.2.S1_at BQ170995 - - 4e+0 At2g17556 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.7734.1.A1_at BM334368 hypothetical protein LOC100193498 - 3e-5 At5g26170 WRKY50 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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