Gene omics information

Query gene ID	1618421_at
Gene name	hypothetical protein LOC100252493
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.7	1618421_at	CF604028	hypothetical protein LOC100252493	-	6e-6	At3g57560	aspartate/glutamate/uridylate kinase family protein	S.X.	H.G.	Please select
0.38	53.6	1613987_s_at	CA818361	hypothetical protein LOC100245893	-	3e-29	At2g16710	hesB-like domain-containing protein	S.X.	H.G.	Please select
0.33	45.7	1617283_at	CF372456	hypothetical LOC100245758	-	4e-20	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	S.X.	H.G.	Please select
0.29	37.7	1618794_at	CB976136	hypothetical protein LOC100240866	-	1e-13	At5g65010	ASN2 (ASPARAGINE SYNTHETASE 2)	S.X.	H.G.	Please select
0.28	37.7	1614352_at	CD801544	hypothetical protein LOC100244495	-	2e-15	At5g42000	ORMDL family protein	S.X.	H.G.	Please select
0.27	34.0	1614540_at	CB970409	hypothetical protein LOC100249281	-	1e-13	At3g28140	calmodulin-binding protein	S.X.	H.G.	Please select
0.26	32.0	1616489_s_at	BQ800343	hypothetical protein LOC100267925	-	7e-12	At2g14910	unknown protein	S.X.	H.G.	Please select
0.22	25.6	1616691_at	CD715631	similar to phosphatidylserine decarboxylase	-	1e-29	At5g57190	PSD2 (phosphatidylserine decarboxylase 2)	S.X.	H.G.	Please select
0.17	18.2	1618880_at	CF214283	hypothetical protein LOC100241859	-	1e-17	At4g27750	ISI1 (IMPAIRED SUCROSE INDUCTION 1)	S.X.	H.G.	Please select
0.16	16.7	1615392_s_at	CF405619	similar to cysteine protease Cp2	-	9e-10	At4g36880	CP1 (CYSTEINE PROTEINASE1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	98.9	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.0	98.7	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.7	98.5	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.1	96.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1362	1622216_at	CB008729	-	-	6e-6	At3g57560	aspartate/glutamate/uridylate kinase family protein	C.G.	S.X.	Please select
0.02	4e-1	34	1615512_at	CA815975	hypothetical protein LOC100246831	-	5e-1	At3g18960	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622382_at	CD012327	-	-	2e+0	At5g12460	-	C.G.	S.X.	Please select
0.03	2e+0	32	1622227_at	CD720290	-	-	2e-12	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	C.G.	S.X.	Please select
0.03	2e+0	32	1618433_at	CD717716	hypothetical protein LOC100255702	-	2e-12	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	C.G.	S.X.	Please select
0.02	2e+0	32	1613074_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	C.G.	S.X.	Please select
0.03	2e+0	32	1612050_at	CF208838	-	-	8e-5	At5g24090	acidic endochitinase (CHIB1)	C.G.	S.X.	Please select
0.02	2e+0	32	1611748_s_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	C.G.	S.X.	Please select
0.02	2e+0	32	1609747_at	CD012327	-	-	2e+0	At5g12460	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	6e-6	52	Arabidopsis thaliana	At3g57560	824923	aspartate/glutamate/uridylate kinase family protein	encodes a N-acetylglutamate kinase, involved in arginine biosynthesis	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	3e-2	40	Glycine max	GmaAffx.45978.1.A1_at	BI967636	-	-	2e-19	At3g57560	aspartate/glutamate/uridylate kinase family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Hordeum vulgare	Contig1709_at	Contig1709	-	-	5e-1	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select
0.15	7e-7	56	Oryza sativa	Os04g0550500	AK070256.1	-	Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase)(AGK) (N-acetyl-L- glutamate 5-phosphotransferase)	1e-2	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	1e-4	48	Populus trichocarpa	PtpAffx.19561.1.S1_at	BU881131	hypothetical protein	-	2e-33	At3g57560	aspartate/glutamate/uridylate kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	6e-9	61	Triticum aestivum	Ta.12735.1.S1_at	BQ169907	-	-	3e+0	At4g17310	unknown protein	C.G.	S.X.	Please select
0.06	4e-5	48	Zea mays	Zm.4700.1.A1_at	AI737948	acetylglutamate kinase	-	2e+1	At5g53780	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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