Gene omics information

Query gene ID	1618387_at
Gene name	hypothetical protein LOC100249044
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1618387_at	CF215295	hypothetical protein LOC100249044	-	4e-25	At2g01970	endomembrane protein 70, putative	S.X.	H.G.	Please select
0.73	90.8	1611760_at	CF604971	hypothetical protein LOC100251409	-	2e+0	At3g14067	subtilase family protein	S.X.	H.G.	Please select
0.50	72.7	1616467_at	CF604042	hypothetical protein LOC100259768	-	2e-45	At1g13560	AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1)	S.X.	H.G.	Please select
0.40	57.7	1612451_at	CF609753	monodehydroascorbate reductase	-	3e-22	At3g52880	monodehydroascorbate reductase, putative	S.X.	H.G.	Please select
0.40	57.7	1608227_at	CF518942	hypothetical protein LOC100255896	-	1e+0	At5g66930	unknown protein	S.X.	H.G.	Please select
0.36	50.7	1615081_at	CF210891	hypothetical protein LOC100252838	-	2e-17	At3g16090	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	97.6	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.3	97.2	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.2	97.1	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.2	97.1	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.1	96.9	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.9	96.6	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.9	96.6	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-9	61	1612944_at	CF517210	hypothetical protein LOC100262388	-	6e-9	At2g36930	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	6e-9	59	1622559_at	CF606481	hypothetical LOC100244512	-	9e-22	At1g42990	ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)	C.G.	S.X.	Please select
0.03	6e-9	59	1621447_s_at	CF404909	hypothetical protein LOC100261458	-	1e-85	At3g26340	20S proteasome beta subunit E, putative	C.G.	S.X.	Please select
0.04	6e-9	59	1621230_at	CF605781	hypothetical protein LOC100243742	-	4e-1	At2g17880	DNAJ heat shock protein, putative	C.G.	S.X.	Please select
0.05	6e-9	59	1620931_at	CB915389	hypothetical LOC100243703	-	2e-2	At3g55940	phosphoinositide-specific phospholipase C, putative	C.G.	S.X.	Please select
0.05	6e-9	59	1620072_s_at	CF605495	similar to Os01g0238200	-	5e+0	At5g52870	unknown protein	C.G.	S.X.	Please select
0.04	6e-9	59	1619057_at	CD799697	hypothetical protein LOC100252925	-	1e-17	At1g56700	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please select
0.04	6e-9	59	1618794_at	CB976136	hypothetical protein LOC100240866	-	1e-13	At5g65010	ASN2 (ASPARAGINE SYNTHETASE 2)	C.G.	S.X.	Please select
0.03	6e-9	59	1616169_at	CD802101	hypothetical protein LOC100244482	-	2e-56	At1g72680	cinnamyl-alcohol dehydrogenase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	4e-25	115	Arabidopsis thaliana	At2g01970	814728	endomembrane protein 70, putative	F:unknown;P:transport;C:integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.55	9e-36	151	Glycine max	GmaAffx.51000.1.S1_at	BM955045	-	-	1e-21	At1g14670	endomembrane protein 70, putative	C.G.	S.X.	Please select
0.09	2e-19	95	Hordeum vulgare	Contig3992_at	Contig3992	-	-	1e-40	At1g14670	endomembrane protein 70, putative	C.G.	S.X.	Please select
0.07	3e-15	83	Oryza sativa	Os10g0112600	AK099727.1	-	Nonaspanin (TM9SF) family protein	4e-37	At2g01970	endomembrane protein 70, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	2e-39	163	Populus trichocarpa	PtpAffx.122552.7.S1_s_at	CV244930	hypothetical protein	-	1e-25	At5g37310	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e-4	46	Triticum aestivum	Ta.12649.1.S1_at	BQ171952	-	-	2e+1	Atmg00980	-	C.G.	S.X.	Please select
0.07	3e-11	67	Zea mays	Zm.17591.1.A1_a_at	AW288561	transmembrane 9 superfamily protein member 1 /// transmembrane 9 superfamily protein member 1	-	3e-44	At2g01970	endomembrane protein 70, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage