Gene omics information

Query gene ID	1618386_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.6	1618386_at	BQ800555	-	-	4e-1	At1g63105	unknown protein	S.X.	H.G.	Please select
0.33	45.7	1612570_at	CB981338	hypothetical protein LOC100249381	-	2e-24	At1g32130	-	S.X.	H.G.	Please select
0.29	37.7	1617080_s_at	CD801784	hypothetical protein LOC100266745	-	2e+0	At3g54080	sugar binding	S.X.	H.G.	Please select
0.06	6.8	1609868_at	CF201186.1	hypothetical protein LOC100262250	-	1e-3	At5g06660	unknown protein	S.X.	H.G.	Please select
0.04	5.2	1607348_at	CF201666.1	-	-	3e-1	At3g24506	unknown protein	S.X.	H.G.	Please select
0.04	5.2	1609075_at	CF405847	hypothetical protein LOC100242672	-	1e-14	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	99.3	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.0	98.0	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
5.0	98.0	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.1	96.9	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.9	96.6	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.9	96.6	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.8	93.4	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-6	48	1616642_at	BQ800221	-	-	5e+0	At5g22040	-	C.G.	S.X.	Please select
0.04	1e-1	34	1620074_at	CD713563	hypothetical protein LOC100244152	-	2e-39	At3g22930	calmodulin, putative	C.G.	S.X.	Please select
0.04	1e-1	34	1609221_at	CD801930	hypothetical protein LOC100250336	-	6e-40	At4g27690	VPS26B (VACUOLAR PROTEIN SORTING 26B)	C.G.	S.X.	Please select
0.04	1e-1	34	1607441_at	CD713563	-	-	2e-39	At3g22930	calmodulin, putative	C.G.	S.X.	Please select
0.02	5e-1	32	1614766_at	BQ799111	hypothetical protein LOC100244101	-	5e-29	At4g32330	-	C.G.	S.X.	Please select
0.04	2e+0	30	1620909_at	CB979931	-	-	1e+0	At3g16240	DELTA-TIP	C.G.	S.X.	Please select
0.02	2e+0	30	1619722_at	CF213692	hypothetical protein LOC100246022	-	7e-26	At5g19010	MPK16	C.G.	S.X.	Please select
0.04	2e+0	30	1615914_at	CB970883	-	-	1e+0	At5g51510	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	30	1615369_at	CB918327	hypothetical protein LOC100244035	-	1e+0	At1g01800	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e-1	34	Arabidopsis thaliana	At1g63105	842614	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	4e-5	48	Glycine max	GmaAffx.44139.1.S1_at	AW756154	-	-	2e+0	At5g38195	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.05	3e+0	30	Hordeum vulgare	Contig8877_s_at	Contig8877	-	-	1e+0	At5g19630	unknown protein	C.G.	S.X.	Please select
0.04	8e-1	34	Oryza sativa	Os11g0210300	AK073964.1	-	Alcohol dehydrogenase 1	2e-30	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e-5	48	Populus trichocarpa	Ptp.5485.1.S1_at	CK087871	-	-	7e-2	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	8e-12	69	Triticum aestivum	Ta.9411.3.S1_x_at	CA499635	-	-	2e-4	At1g16810	unknown protein	C.G.	S.X.	Please select
0.07	3e-12	69	Zea mays	Zm.14845.1.S1_at	AY106843.1	hypothetical protein LOC100277283	-	2e+0	At4g34020	DJ-1 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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