Gene omics information

Query gene ID	1618348_at
Gene name	hypothetical protein LOC100265921
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.7	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	S.X.	H.G.	Please select
0.61	83.2	1618813_at	CB970187	hypothetical protein LOC100263840	-	2e+0	At1g69828	-	S.X.	H.G.	Please select
0.56	79.4	1614602_at	CB004149	hypothetical protein LOC100244335	-	1e-32	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	S.X.	H.G.	Please select
0.46	66.5	1610526_at	CF212320	hypothetical protein LOC100243575	-	2e-1	At2g44580	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.43	61.5	1607444_at	BQ798524	hypothetical protein LOC100247182	-	1e+0	At4g20095	unknown protein	S.X.	H.G.	Please select
0.42	60.1	1613769_at	CB970019	hypothetical protein LOC100265267	-	4e-48	At1g51690	ATB ALPHA	S.X.	H.G.	Please select
0.31	41.3	1611870_at	CF414975	hypothetical protein LOC100247177	-	8e-152	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.4	91.3	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.39	2e-68	258	1615972_at	CF215988	hypothetical protein LOC100249712	-	9e-33	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	C.G.	S.X.	Please select
0.13	1e-16	85	1621911_at	CF214080	hypothetical protein LOC100252396	-	3e-64	At3g15060	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	C.G.	S.X.	Please select
0.10	1e-10	65	1608533_at	CF212662	hypothetical protein LOC100242285	-	2e-18	At1g73640	AtRABA6a (Arabidopsis Rab GTPase homolog A6a)	C.G.	S.X.	Please select
0.07	8e-9	59	1619728_at	BM437855	-	-	1e-35	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	C.G.	S.X.	Please select
0.07	8e-9	59	1607044_at	BM437855	hypothetical protein LOC100246065	-	1e-35	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	C.G.	S.X.	Please select
0.04	1e-4	46	1609466_at	CD797661	hypothetical protein LOC100262838	-	3e-61	At5g65270	AtRABA4a (Arabidopsis Rab GTPase homolog A4a)	C.G.	S.X.	Please select
0.03	7e-3	40	1619982_at	CD798980	hypothetical protein LOC100246310	-	4e-140	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	C.G.	S.X.	Please select
0.02	3e-2	38	1622514_at	CA815335	hypothetical protein LOC100255054	-	6e-1	At5g15830	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)	C.G.	S.X.	Please select
0.05	3e-2	38	1609543_at	CB348420	hypothetical protein LOC100263184	-	2e-105	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	1e-47	190	Arabidopsis thaliana	At5g45750	834614	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, nucleus, vacuole;MOFPBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	5e-66	252	Glycine max	Gma.1450.1.S1_at	AF532625.1	GTP-binding protein	-	1e-32	At4g18800	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D)	C.G.	S.X.	Please select
0.34	8e-44	176	Hordeum vulgare	Contig3169_at	Contig3169	-	-	2e-13	At1g16920	ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B)	C.G.	S.X.	Please select
0.34	4e-33	143	Oryza sativa	Os01g0750000	AY327044.1	-	Ras-related protein RIC2	1e-20	At5g60860	AtRABA1f (Arabidopsis Rab GTPase homolog A1f)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.38	2e-59	230	Populus trichocarpa	Ptp.1415.1.S1_at	CA821659	hypothetical protein	-	1e-41	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	7e-46	184	Triticum aestivum	Ta.28907.1.S1_at	CD871940	-	-	1e-14	At4g18800	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D)	C.G.	S.X.	Please select
0.33	2e-29	129	Zea mays	Zm.10590.2.A1_at	CF629988	hypothetical protein LOC100194331	-	3e-24	At4g18800	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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