Gene omics information

Query gene ID	1618277_at
Gene name	hypothetical protein LOC100265689
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1618277_at	CF568829	hypothetical protein LOC100265689	-	3e-48	At1g79530	GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)	S.X.	H.G.	Please select
0.29	37.7	1612257_at	CD711914	hypothetical protein LOC100250227	-	1e+0	At2g04910	glycosyl hydrolase family protein 17	S.X.	H.G.	Please select
0.29	37.7	1616293_at	CF212351	hypothetical protein LOC100256817	-	1e-3	At3g44750	HDA3 (HISTONE DEACETYLASE 3)	S.X.	H.G.	Please select
0.20	22.4	1619090_at	BQ795968	hypothetical protein LOC100249114	-	2e-17	At2g24270	ALDH11A3	S.X.	H.G.	Please select
0.14	14.4	1612820_s_at	CF214272	hypothetical protein LOC100241755	-	2e-30	At1g09690	60S ribosomal protein L21 (RPL21C)	S.X.	H.G.	Please select
0.13	13.3	1608461_at	BQ797145	hypothetical protein LOC100264959	-	6e-64	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	S.X.	H.G.	Please select
0.10	10.3	1608867_s_at	CF200773.1	hypothetical protein LOC100261444	-	3e-15	At4g26230	60S ribosomal protein L31 (RPL31B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	97.2	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436366	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436365	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	9e-138	488	1618095_at	CF210792	-	-	1e-82	At1g16300	GAPCP-2	C.G.	S.X.	Please select
0.04	4e-4	44	1615814_at	CB920915	hypothetical protein LOC100264789	-	0	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	C.G.	S.X.	Please select
0.04	3e-2	38	1621919_at	CF404571	hypothetical protein LOC100247550	-	2e-8	At4g12780	heat shock protein binding	C.G.	S.X.	Please select
0.03	1e-1	36	1613781_at	CF608878	hypothetical protein LOC100265659	-	3e-1	At5g63030	glutaredoxin, putative	C.G.	S.X.	Please select
0.03	1e-1	36	1609546_s_at	CF608878	hypothetical protein LOC100265659	-	3e-1	At5g63030	glutaredoxin, putative	C.G.	S.X.	Please select
0.03	4e-1	34	1618532_at	CF512951	-	-	4e+0	At4g04810	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	C.G.	S.X.	Please select
0.03	4e-1	34	1615306_at	CD800868	hypothetical protein LOC100260392	-	1e+0	At5g58310	MES18 (METHYL ESTERASE 18)	C.G.	S.X.	Please select
0.03	2e+0	32	1619804_at	CB968906	hypothetical protein LOC100265198	-	2e-1	At5g47650	ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)	C.G.	S.X.	Please select
0.01	2e+0	32	1619595_at	CF207822	hypothetical protein LOC100256839	-	4e-39	At4g04040	MEE51 (maternal effect embryo arrest 51)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	3e-48	192	Arabidopsis thaliana	At1g79530	844291	GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)	F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:glycolysis, glucose metabolic process, metabolic process;C:plastid, membrane;BOPFMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.61505.1.A1_at	CD412554	-	-	2e+0	At1g35460	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.08	2e-13	75	Hordeum vulgare	Contig3723_at	Contig3723	-	-	6e-88	At1g16300	GAPCP-2	C.G.	S.X.	Please select
0.22	6e-26	119	Oryza sativa	Os.19152.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	4e-63	242	Populus trichocarpa	PtpAffx.6321.1.S1_a_at	CX177362	hypothetical protein	-	1e-76	At1g79530	GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	2e-6	54	Triticum aestivum	Ta.9557.2.S1_a_at	CA644324	-	-	1e-9	At1g79530	GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)	C.G.	S.X.	Please select
0.13	2e-13	75	Zea mays	Zm.8992.1.S1_at	AY103691.1	glyceraldehyde-3-phosphate dehydrogenase, cytosolic	-	5e-58	At1g79530	GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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