CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1618227_at

Gene name hypothetical protein LOC100256050

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 90.8 1618227_at CB981519 hypothetical protein LOC100256050 - 4e-20 At1g73570 suppressor of lin-12-like protein-related / sel-1 protein-related S.X. H.G.
0.83 94.6 1607294_at CB347461 hypothetical protein LOC100246786 - 4e-112 At5g58290 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) S.X. H.G.
0.80 93.6 1616931_s_at CF511798 similar to PBC1 (20S proteasome beta subunit C1); peptidase - 5e-66 At1g21720 PBC1 (PROTEASOME BETA SUBUNIT C1) S.X. H.G.
0.80 93.6 1615440_at CF210450 hypothetical protein LOC100257857 - 9e-5 At5g49945 unknown protein S.X. H.G.
0.67 87.9 1606813_s_at CF211962 hypothetical protein LOC100245986 - 9e-77 At5g47200 ATRAB1A S.X. H.G.
0.55 77.3 1619471_at BQ794353 hypothetical protein LOC100243217 - 1e-112 At3g46060 ATRAB8A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.0 88.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
1.9 87.2 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
1.9 87.2 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
1.8 86.0 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7 84.7 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7 84.7 GSM436363 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM287893 Pink soft berry C12 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
1.6 83.3 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.6 83.3 GSM287892 Pink soft berry C11 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
1.6 83.3 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 5e-32 137 1619447_at BQ794704 - - 4e+0 At5g65730 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.03 5e-1 34 1608866_at CF414105 - - 2e-1 At4g20350 unknown protein C.G. S.X.
0.02 2e+0 32 1618155_at CD004374 hypothetical protein LOC100242982 - 1e-4 At1g07250 UGT71C4 (UDP-GLUCOSYL TRANSFERASE 71C4) C.G. S.X.
0.03 2e+0 32 1617373_s_at CA816697 hypothetical protein LOC100245878 - 5e-6 At5g23570 SGS3 (SUPPRESSOR OF GENE SILENCING 3) C.G. S.X.
0.02 2e+0 32 1614745_at CA818458 hypothetical protein LOC100252143 - 2e-8 At2g24090 ribosomal protein L35 family protein C.G. S.X.
0.02 2e+0 32 1612801_at BQ796403 hypothetical protein LOC100254774 - 1e-13 At5g06560 unknown protein C.G. S.X.
0.02 2e+0 32 1610207_at CB969131 hypothetical protein LOC100247522 - 2e-52 At1g73430 sec34-like family protein C.G. S.X.
0.03 2e+0 32 1608656_at CF211834 hypothetical protein LOC100244155 - 2e-7 At2g04240 XERICO C.G. S.X.
0.03 2e+0 32 1607841_at CA816697 hypothetical protein LOC100245878 - 5e-6 At5g23570 SGS3 (SUPPRESSOR OF GENE SILENCING 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 4e-20 99 Arabidopsis thaliana At1g73570 843691 suppressor of lin-12-like protein-related / sel-1 protein-related F:binding;P:biological_process unknown;C:endomembrane system;BOMFPV - - - C.G. S.X.
0.20 4e-42 173 Glycine max Gma.1635.1.S1_at AW349618 SEL-1 - 3e-14 At1g73570 suppressor of lin-12-like protein-related / sel-1 protein-related C.G. S.X.
0.02 8e-1 34 Hordeum vulgare HVSMEi0002M06r2_at HVSMEi0002M06r2 - - 4e+0 At5g20460 unknown protein C.G. S.X.
0.04 2e-7 57 Oryza sativa Os03g0259300 AK109167.1 - Sel1-like repeat containing protein 9e-5 At1g18260 suppressor of lin-12-like protein-related / sel-1 protein-related C.G. S.X.
0.30 2e-41 171 Populus trichocarpa PtpAffx.140982.1.A1_at CV277128 - - 2e-34 At1g73570 suppressor of lin-12-like protein-related / sel-1 protein-related C.G. S.X.
0.02 7e+0 32 Triticum aestivum TaAffx.79347.1.S1_at CA717802 - - 6e-2 At1g77855 unknown protein C.G. S.X.
0.03 1e-2 40 Zea mays Zm.1064.1.S1_at BE050611 - - 7e+0 At3g57650 LPAT2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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