Gene omics information

Query gene ID	1618031_s_at
Gene name	hypothetical protein LOC100243967
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	87.9	1618031_s_at	CF404451	hypothetical protein LOC100243967	-	2e-12	At1g79040	PSBR (photosystem II subunit R)	S.X.	H.G.	Please select
0.77	92.3	1616847_s_at	CA816751	hypothetical protein LOC100267942	-	2e-12	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select
0.67	87.9	1613936_x_at	CF568996	-	-	8e-24	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select
0.67	87.9	1611247_s_at	CF206748.1	similar to cytochrome f	-	2e+0	At1g65490	unknown protein	S.X.	H.G.	Please select
0.35	48.5	1610039_s_at	CA817529	similar to NADH-plastoquinone oxidoreductase subunit K	-	0	Atcg00480	-	S.X.	H.G.	Please select
0.25	30.5	1622302_s_at	CF207602	hypothetical protein LOC100245459	-	2e-19	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	96.7	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.7	96.2	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.8	93.4	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
2.7	93.0	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.58	2e-138	490	1618238_at	CB339270	-	-	2e-1	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.46	4e-69	260	1615543_at	CB341248	-	-	2e+1	At5g51610	ribosomal protein L11 family protein	C.G.	S.X.	Please select
0.32	1e-32	139	1617726_at	CB345886	-	-	8e-1	At5g17080	cathepsin-related	C.G.	S.X.	Please select
0.18	2e-27	121	1616230_x_at	CF202354.1	-	-	2e+1	At5g43510	-	C.G.	S.X.	Please select
0.21	4e-26	117	1614377_at	CB344123	-	-	9e-1	At4g12900	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	C.G.	S.X.	Please select
0.16	1e-22	105	1618907_x_at	CF202612.1	-	-	4e+0	At5g17470	calmodulin-related protein, putative	C.G.	S.X.	Please select
0.02	4e-1	34	1612814_at	CD721331	-	-	9e-2	At1g35660	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	34	1609048_at	CD721331	-	-	9e-2	At1g35660	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	1622397_at	CF515693	-	-	7e-2	At2g39970	peroxisomal membrane protein (PMP36)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	2e-12	73	Arabidopsis thaliana	At1g79040	844245	PSBR (photosystem II subunit R)	Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	6e-7	56	Glycine max	Gma.15220.1.S1_s_at	CD398333	Ubiquitin-conjugation enzyme gene	-	4e-12	At4g21560	VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)	C.G.	S.X.	Please select
0.09	2e-4	46	Hordeum vulgare	rbaal9h21_s_at	rbaal9h21	-	-	5e-5	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.18	8e-7	56	Oryza sativa	Os08g0200300	U86018.1	-	Photosystem II 10 kDa polypeptide, chloroplastprecursor	2e-5	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	1e-23	111	Populus trichocarpa	Ptp.1134.1.S1_x_at	CV280712	hypothetical protein	-	6e-10	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	6e-3	42	Triticum aestivum	Ta.12849.1.S1_at	CD490720	-	-	6e-12	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.14	1e-11	69	Zea mays	Zm.14810.1.S1_a_at	BG841058	photosystem II 10 kDa polypeptide	-	2e-9	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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