Gene omics information

Query gene ID	1617936_at
Gene name	similar to 26S proteasome subunit RPN5b
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1617936_at	BQ797736	similar to 26S proteasome subunit RPN5b	-	3e-23	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	S.X.	H.G.	Please select
0.91	98.8	1614946_at	CF510992	hypothetical protein LOC100258219	-	8e-64	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	S.X.	H.G.	Please select
0.83	94.6	AFFX-Vvi-actin-5_at	-	actin 1	-	0			S.X.	H.G.	Please select
0.73	90.8	1614631_at	CB979660	hypothetical protein LOC100254376	-	1e-137	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	S.X.	H.G.	Please select
0.67	87.9	1620627_at	CF214379	hypothetical protein LOC100259195	-	1e-22	At1g20110	zinc finger (FYVE type) family protein	S.X.	H.G.	Please select
0.57	79.8	1607136_at	CF605014	hypothetical protein LOC100257366	-	4e-28	At4g38630	RPN10 (REGULATORY PARTICLE NON-ATPASE 10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	96.0	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	1622256_at	CD715817	-	-	1e+0	At1g04180	flavin-containing monooxygenase family protein / FMO family protein	C.G.	S.X.	Please select
0.02	5e-1	34	1618664_at	CA809027	-	-	4e-1	At5g13620	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	1618462_at	CD715817	-	-	1e+0	At1g04180	flavin-containing monooxygenase family protein / FMO family protein	C.G.	S.X.	Please select
0.02	5e-1	34	1610366_at	CB976250	hypothetical protein LOC100261806	-	8e-5	At4g22200	AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3)	C.G.	S.X.	Please select
0.02	2e+0	32	1622802_at	CD012590	-	-	1e+0	At5g26170	WRKY50	C.G.	S.X.	Please select
0.02	2e+0	32	1621614_at	CB837613	hypothetical LOC100249559	-	0	Atcg01000	-	C.G.	S.X.	Please select
0.02	2e+0	32	1620806_at	CF515286	hypothetical protein LOC100245823	-	2e-1	At4g37685	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1619564_s_at	CB837613	-	-	0	Atcg01000	-	C.G.	S.X.	Please select
0.02	2e+0	32	1619413_at	CB344818	-	-	7e-6	At1g64850	calcium-binding EF hand family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	3e-23	109	Arabidopsis thaliana	At5g64760	836597	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	6e-115	414	Glycine max	Gma.16788.1.S1_at	CD410585	-	-	8e-32	At5g64760	RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)	C.G.	S.X.	Please select
0.23	6e-17	87	Hordeum vulgare	Contig6375_at	Contig6375	-	-	2e-35	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	C.G.	S.X.	Please select
0.28	7e-23	109	Oryza sativa	Os03g0851300	AK105457.1	-	Proteasome component region PCI domain containingprotein	5e-24	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	2e-40	167	Populus trichocarpa	PtpAffx.17440.1.S1_a_at	CV229151	hypothetical protein	-	1e-49	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	7e-6	52	Triticum aestivum	TaAffx.86571.1.S1_at	CA605475	-	-	4e+0	At5g25990	unknown protein	C.G.	S.X.	Please select
0.28	5e-11	67	Zea mays	Zm.12704.2.A1_at	BM080159	-	-	4e-21	At5g09900	EMB2107 (EMBRYO DEFECTIVE 2107)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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