Gene omics information

Query gene ID	1617846_at
Gene name	hypothetical protein LOC100242395
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1617846_at	CF210020	hypothetical protein LOC100242395	-	2e-47	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	S.X.	H.G.	Please select
0.67	87.9	1622760_at	CD719223	hypothetical protein LOC100266427	-	1e+0	At3g61920	unknown protein	S.X.	H.G.	Please select
0.60	81.9	1620683_at	CA811381	hypothetical protein LOC100245630	-	8e-9	At4g26160	ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)	S.X.	H.G.	Please select
0.50	72.7	1619820_s_at	CA811381	hypothetical protein LOC100245630	-	8e-9	At4g26160	ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1)	S.X.	H.G.	Please select
0.40	57.7	1612005_s_at	CB004075	-	-	1e-38	Atcg00440	-	S.X.	H.G.	Please select
0.21	24.0	1611279_s_at	CB343789	-	-	0	Atcg01010	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	98.0	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.7	97.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
4.4	97.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
4.4	97.3	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
4.2	97.1	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
4.1	96.9	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.0	96.7	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.9	96.6	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.8	96.4	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.8	96.4	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	1937	1609392_s_at	CF210020	hypothetical protein LOC100242395	-	2e-47	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	C.G.	S.X.	Please select
0.49	0	1029	1618567_at	CF202852.1	-	-	2e-40	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	C.G.	S.X.	Please select
0.20	1e-48	192	1615632_a_at	CB977610	hypothetical protein LOC100262698	-	3e-13	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	C.G.	S.X.	Please select
0.05	5e-11	67	1611988_s_at	CB973950	hypothetical protein LOC100262698	-	3e+0	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	C.G.	S.X.	Please select
0.02	7e-1	34	1621764_at	CB343516	-	-	4e+0	At5g36662	-	C.G.	S.X.	Please select
0.02	7e-1	34	1618007_x_at	CF201646.1	-	-	2e+0	At2g27480	calcium ion binding	C.G.	S.X.	Please select
0.02	7e-1	34	1612841_s_at	CF201646.1	-	-	2e+0	At2g27480	calcium ion binding	C.G.	S.X.	Please select
0.01	7e-1	34	1609445_at	CF215229	hypothetical protein LOC100242218	-	6e-69	At4g29160	SNF7.1	C.G.	S.X.	Please select
0.02	7e-1	34	1608174_at	CF201646.1	-	-	2e+0	At2g27480	calcium ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	2e-47	190	Arabidopsis thaliana	At3g57870	824956	SCE1 (SUMO CONJUGATION ENZYME 1)	Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	1e-95	351	Glycine max	GmaAffx.90199.1.A1_s_at	CF806975	-	-	1e-44	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	C.G.	S.X.	Please select
0.31	1e-37	157	Hordeum vulgare	Contig5186_at	Contig5186	-	-	1e-25	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	C.G.	S.X.	Please select
0.34	5e-49	196	Oryza sativa	Os03g0123100	AK062161.1	-	SUMO E2 conjugating enzyme SCE1	6e-19	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	3e-40	167	Populus trichocarpa	Ptp.6504.2.S1_at	BU887013	-	-	3e-29	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	2e-44	180	Triticum aestivum	Ta.3308.1.S1_at	BJ262335	-	-	8e-31	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	C.G.	S.X.	Please select
0.35	9e-32	137	Zea mays	Zm.4940.2.S1_a_at	AI979640	-	-	2e-21	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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