Gene omics information

Query gene ID	1617825_s_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1617825_s_at	CF205420.1	-	-	3e-23	At1g15880	GOS11 (golgi snare 11)	S.X.	H.G.	Please select
0.67	87.9	1621079_at	CF202060.1	-	-	3e-51	At3g14290	PAE2	S.X.	H.G.	Please select
0.61	83.2	1613423_a_at	CB969431	-	-	1e-18	At1g65270	unknown protein	S.X.	H.G.	Please select
0.61	83.2	1621710_at	CF201680.1	-	-	3e-1	At1g59690	-	S.X.	H.G.	Please select
0.33	45.7	1607563_at	CF203757.1	-	-	7e-49	At5g61510	NADP-dependent oxidoreductase, putative	S.X.	H.G.	Please select
0.29	37.7	1613156_at	CF209286	hypothetical protein LOC100247989	-	6e-5	At1g53400	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	97.3	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.2	97.1	GSM436418	V. riparia (VR, PI588259) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
3.7	96.2	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
3.5	95.7	GSM436395	V. riparia (VR, PI588259) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436421	V. riparia (VR, PI588259) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	1e-164	577	1609811_at	CF208639	-	-	4e+0	At5g37850	SOS4 (SALT OVERLY SENSITIVE 4)	C.G.	S.X.	Please select
0.17	3e-76	284	1607695_at	CF208550	-	-	2e-9	At1g15880	GOS11 (golgi snare 11)	C.G.	S.X.	Please select
0.01	4e-1	34	1614206_at	CA816816	hypothetical protein LOC100246568	-	7e-82	At1g10760	SEX1 (STARCH EXCESS 1)	C.G.	S.X.	Please select
0.02	4e-1	34	1610969_at	CD798647	hypothetical protein LOC100261996	-	2e-18	At1g71310	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622547_at	CF201768.1	-	-	1e-41	At3g58610	ketol-acid reductoisomerase	C.G.	S.X.	Please select
0.01	2e+0	32	1621982_s_at	BQ794582	hypothetical protein LOC100265955	-	1e-14	At1g51410	cinnamyl-alcohol dehydrogenase, putative (CAD)	C.G.	S.X.	Please select
0.03	2e+0	32	1621300_at	CB920384	hypothetical protein LOC100244618	-	4e+0	At4g23420	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1619051_at	CF372188	hypothetical protein LOC100252679	-	5e-6	At2g03680	SPR1 (SPIRAL1)	C.G.	S.X.	Please select
0.02	2e+0	32	1617911_at	BQ796680	hypothetical protein LOC100247972	-	9e-2	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	3e-23	109	Arabidopsis thaliana	At1g15880	838158	GOS11 (golgi snare 11)	Golgi SNARE 11 protein (GOS11)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	2e-46	186	Glycine max	Gma.1413.1.S1_a_at	AW734487	-	-	8e-37	At1g15880	GOS11 (golgi snare 11)	C.G.	S.X.	Please select
0.16	7e-4	44	Hordeum vulgare	Contig7723_at	Contig7723	-	-	2e+0	At5g55280	FTSZ1-1	C.G.	S.X.	Please select
0.05	7e-1	36	Oryza sativa	Os08g0440000	AK102539.1	-	Vesicle transport v-SNARE family protein	2e-3	At1g15880	GOS11 (golgi snare 11)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	2e-22	107	Populus trichocarpa	PtpAffx.73007.1.A1_at	CV246599	-	-	2e-16	At1g15880	GOS11 (golgi snare 11)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	4e-1	36	Triticum aestivum	TaAffx.52562.1.S1_at	CA705440	-	-	7e+0	At5g05550	transcription factor	C.G.	S.X.	Please select
0.12	4e-8	57	Zea mays	Zm.18090.1.A1_at	AY106351.1	-	-	1e-8	At1g15880	GOS11 (golgi snare 11)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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