Gene omics information

Query gene ID	1617822_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1617822_at	CB976807	-	-	1e-42	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	S.X.	H.G.	Please select
0.46	66.5	1615252_at	BQ792622	hypothetical protein LOC100265321	-	6e-12	At4g10030	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.46	66.5	1615608_at	BQ792785	hypothetical protein LOC100248960 /// hypothetical protein LOC100255476	-	1e-22	At4g13050	acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative	S.X.	H.G.	Please select
0.26	32.0	1609080_at	BQ797210	hypothetical protein LOC100265018	-	9e-21	At5g54440	unknown protein	S.X.	H.G.	Please select
0.19	20.9	1621419_at	BQ796694	similar to Os09g0515500	-	4e+0	At3g53370	DNA-binding S1FA family protein	S.X.	H.G.	Please select
0.08	8.5	1610900_at	CF516848	hypothetical LOC100244581	-	2e-1	At1g78480	prenyltransferase/squalene oxidase repeat-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.5	99.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
6.8	99.0	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
4.0	96.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.9	96.6	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
3.6	96.0	GSM147702	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	31
3.5	95.7	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
3.4	95.5	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.3	95.2	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7
3.3	95.2	GSM436416	V. riparia (VR, PI588259) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	0	1241	1607352_at	CF201433.1	hypothetical protein LOC100263260	-	1e-28	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please select
0.52	0	1178	1617797_s_at	CF210697	hypothetical protein LOC100263260	-	6e-46	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please select
0.28	7e-122	436	1621969_s_at	CB349073	hypothetical protein LOC100263646	-	3e-45	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.31	3e-118	424	1606442_at	CF511173	hypothetical protein LOC100246819	-	7e-59	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please select
0.18	6e-73	274	1618754_at	CF203233.1	hypothetical protein LOC100263646	-	5e-31	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.19	8e-23	107	1619048_at	BQ798794	-	-	4e+0	At5g39250	F-box family protein	C.G.	S.X.	Please select
0.06	1e-15	83	1606722_at	AF440310.1	actin depolymerizing factor	-	1e-19	At2g31200	ADF6 (ACTIN DEPOLYMERIZING FACTOR 6)	C.G.	S.X.	Please select
0.05	3e-13	75	1611054_at	CF516017	-	-	4e+0	Atmg01290	-	C.G.	S.X.	Please select
0.04	6e-8	57	1618712_at	CB003306	-	-	3e-1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-42	174	Arabidopsis thaliana	At3g46010	823744	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	Actin-depolymerizing factor (ADF) and cofilin define a family of actin-binding proteins essential for the rapid turnover of filamentous actin in vivo.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.27	2e-76	287	Glycine max	GmaAffx.88908.1.A1_x_at	CK605775	-	-	2e-28	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	C.G.	S.X.	Please select
0.17	3e-23	109	Hordeum vulgare	Contig5010_at	Contig5010	-	-	3e-20	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	C.G.	S.X.	Please select
0.11	3e-14	81	Oryza sativa	Os02g0663800	AK069605.1	-	Actin-depolymerizing factor (ADF)	2e-24	At4g25590	ADF7 (actin depolymerizing factor 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	1e-98	361	Populus trichocarpa	Ptp.1543.1.S1_at	CK089216	actin depolymerizing factor 6	-	2e-30	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	2e-20	101	Triticum aestivum	Ta.5577.2.S1_at	CA624616	-	-	8e-14	At3g46000	ADF2 (ACTIN DEPOLYMERIZING FACTOR 2)	C.G.	S.X.	Please select
0.11	3e-17	89	Zea mays	Zm.15444.1.S1_at	CK347287	actin-depolymerizing factor	-	6e-25	At4g25590	ADF7 (actin depolymerizing factor 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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