CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1617756_at

Gene name hypothetical protein LOC100253194

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.8 1617756_at CB981493 hypothetical protein LOC100253194 - 2e+1 At5g57560 TCH4 (Touch 4) S.X. H.G.
0.91 98.8 1618296_s_at CD711959 - - 1e+0 At2g01275 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.91 98.8 1615798_at AB073013.1 - - 1e-5 At1g66370 MYB113 (myb domain protein 113) S.X. H.G.
0.91 98.8 1611457_at CD711959 - - 1e+0 At2g01275 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.83 94.6 1620959_s_at CB915151 myb-relared transcription factor VvMYBA2 - 4e+0 At5g19855 unknown protein S.X. H.G.
0.67 87.9 1610071_at BQ797708 hypothetical protein LOC100253046 - 2e-4 At1g65680 ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
29.9 100.0 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
24.5 100.0 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
22.6 100.0 GSM287899 Red soft berry C13 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
20.9 99.9 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
16.5 99.9 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
16.4 99.9 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
15.0 99.9 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
12.1 99.8 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
10.5 99.7 GSM287894 Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
9.6 99.6 GSM287896 Pink soft berry C27 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 32 1611889_at CF201915.1 - - 2e-24 At3g07680 emp24/gp25L/p24 family protein C.G. S.X.
0.03 5e+0 30 1619881_at CF201667.1 - - 5e+0 At5g48860 unknown protein C.G. S.X.
0.02 5e+0 30 1618025_at CF208636 hypothetical protein LOC100264180 - 2e-12 At3g53120 VPS37-1 C.G. S.X.
0.02 5e+0 30 1617153_at CF516521 hypothetical protein LOC100260369 - 2e+0 At2g32360 ubiquitin family protein C.G. S.X.
0.03 5e+0 30 1612860_at CF210174 hypothetical protein LOC100261292 - 4e-54 At3g22950 ATARFC1 (ADP-ribosylation factor C1) C.G. S.X.
0.02 5e+0 30 1611540_at CB004379 - - 2e-43 At3g54540 ATGCN4 C.G. S.X.
0.02 5e+0 30 1610968_at BQ796931 similar to cysteine proteinase inhibitor - 3e-11 At5g05110 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.03 5e+0 30 1610343_s_at CB974266 - - 3e+0 At2g03090 ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) C.G. S.X.
0.02 5e+0 30 1609502_at CF372687 similar to GroEL-like chaperone, ATPase - 3e-107 At3g23990 HSP60 (HEAT SHOCK PROTEIN 60) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+1 30 Arabidopsis thaliana At5g57560 835860 TCH4 (Touch 4) Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli - - - C.G. S.X.
0.05 9e-2 38 Glycine max Gma.10529.2.S1_a_at BU927530 - - 1e-2 At3g59600 NRPB8B C.G. S.X.
0.03 8e+0 30 Hordeum vulgare HO08C10S_at HO08C10S - - 1e+1 At5g65274 - C.G. S.X.
0.02 2e+0 34 Oryza sativa Os.56913.1.S1_at - - - 0 C.G. S.X.
0.04 6e+0 32 Populus trichocarpa PtpAffx.25054.1.A1_at CV235521 - - 7e+0 At5g53120 SPDS3 (SPERMIDINE SYNTHASE 3) C.G. S.X.
0.04 2e+1 30 Triticum aestivum TaAffx.78394.1.S1_at CA733186 - - 2e+0 At4g13575 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.6879.1.A1_at AI065542 - - 4e+0 At3g24510 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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