Gene omics information

Query gene ID	1617697_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	95.1	1617697_at	CD714002	-	-	1e-25	At4g27800	protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)	S.X.	H.G.	Please select
0.58	79.8	1617517_at	CF606810	hypothetical protein LOC100265819	-	2e-2	At4g25990	CIL	S.X.	H.G.	Please select
0.53	75.2	1615369_at	CB918327	hypothetical protein LOC100244035	-	1e+0	At1g01800	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.50	72.7	1617863_at	CA817296	hypothetical protein LOC100258796	-	4e-4	At5g20220	zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please select
0.50	72.7	1617391_at	CF211113	hypothetical protein LOC100254621	-	1e-55	At1g04620	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family	S.X.	H.G.	Please select
0.46	66.5	1611947_at	CA818604	hypothetical protein LOC100265593	-	2e-6	At5g50090	unknown protein	S.X.	H.G.	Please select
0.43	61.5	1613501_at	BM438105	hypothetical protein LOC100256401	-	5e-19	At3g02690	integral membrane family protein	S.X.	H.G.	Please select
0.42	60.1	1614156_at	CB339309	-	-	1e-3	At3g54050	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	S.X.	H.G.	Please select
0.40	57.7	1608777_at	CB344861	hypothetical protein LOC100266496	-	6e-19	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	S.X.	H.G.	Please select
0.37	51.7	1615234_at	CB342968	hypothetical protein LOC100258729	-	3e-17	At1g54350	ABC transporter family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.6	98.9	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.9	98.6	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
5.1	98.1	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.7	97.7	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.7	97.7	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
4.6	97.6	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.5	97.5	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
4.3	97.2	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.8	96.4	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.6	96.0	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1298	1613879_at	CD714002	hypothetical protein LOC100264113	-	1e-25	At4g27800	protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)	C.G.	S.X.	Please select
0.02	2e+0	32	1622556_at	CB972747	hypothetical protein LOC100254279	-	6e-59	At1g73600	methyltransferase/ phosphoethanolamine N-methyltransferase	C.G.	S.X.	Please select
0.02	2e+0	32	1621380_at	CF513977	-	-	0	Atcg00680	-	C.G.	S.X.	Please select
0.02	2e+0	32	1620744_at	CF403966	hypothetical protein LOC100248911	-	2e-6	At1g20340	DRT112	C.G.	S.X.	Please select
0.02	2e+0	32	1620724_at	CB915307	hypothetical protein LOC100245746	-	3e-7	At4g29220	PFK1 (PHOSPHOFRUCTOKINASE 1)	C.G.	S.X.	Please select
0.03	2e+0	32	1620529_at	CF215047	-	-	1e+0	At2g18410	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1617605_at	CF513977	-	-	0	Atcg00680	-	C.G.	S.X.	Please select
0.03	2e+0	32	1615573_a_at	CF214242	-	-	2e-5	At1g08580	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1613976_at	BQ796549	similar to RNA binding protein-like protein	-	4e-2	At5g04600	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	1e-25	117	Arabidopsis thaliana	At4g27800	828893	protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:nucleolus, nucleus, chloroplast, protein serine/threonine phosphatase complex, cytoplasm;PMOFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.31	2e-37	157	Glycine max	Gma.2988.1.S1_at	BE609198	-	-	2e-19	At4g27800	protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)	C.G.	S.X.	Please select
0.08	4e-2	38	Hordeum vulgare	Contig10850_at	Contig10850	-	-	1e-11	At4g27800	protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)	C.G.	S.X.	Please select
0.13	2e-7	57	Oryza sativa	Os01g0552300	AK106278.1	-	Protein phosphatase-2C	5e-11	At4g27800	protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.47	2e-52	206	Populus trichocarpa	PtpAffx.8343.1.A1_s_at	CV283611	hypothetical protein	-	3e-31	At4g27800	protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	Ta.11603.2.S1_a_at	CA641341	-	-	5e-18	At1g68410	protein phosphatase 2C-related / PP2C-related	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	ZmAffx.1008.1.A1_at	AI881386	-	-	3e+0	At5g19030	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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