Gene omics information

Query gene ID	1617671_s_at
Gene name	hypothetical protein LOC100248784
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	80.6	1617671_s_at	AY395744.1	hypothetical protein LOC100248784	-	2e-5	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	S.X.	H.G.	Please select
0.88	95.4	1622598_at	CF372747	hypothetical protein LOC100253485	-	3e-27	At5g22250	CCR4-NOT transcription complex protein, putative	S.X.	H.G.	Please select
0.75	91.3	1609190_at	BQ798327	hypothetical protein LOC100253381	-	6e+0	At3g23180	-	S.X.	H.G.	Please select
0.71	89.5	1612490_at	CB035871	-	-	4e+0	At2g39920	acid phosphatase class B family protein	S.X.	H.G.	Please select
0.67	87.9	1606975_at	CD799008	hypothetical protein LOC100248784	-	4e-5	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	S.X.	H.G.	Please select
0.67	87.9	1608966_at	CB982651	hypothetical protein LOC100256404	-	2e-4	At5g59550	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.63	84.3	1608256_at	CF404926	hypothetical protein LOC100265659	-	3e-2	At5g23680	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.59	80.6	1616198_at	CF405950	hypothetical protein LOC100242144	-	1e-7	At1g28370	ERF11 (ERF DOMAIN PROTEIN 11)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.1	99.4	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
7.9	99.3	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
7.6	99.3	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
7.4	99.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.9	99.1	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.8	99.0	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.7	99.0	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
6.6	98.9	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.0	98.7	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
6.0	98.7	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.79	0	1445	1606975_at	CD799008	hypothetical protein LOC100248784	-	4e-5	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.19	1e-25	115	1616198_at	CF405950	hypothetical protein LOC100242144	-	1e-7	At1g28370	ERF11 (ERF DOMAIN PROTEIN 11)	C.G.	S.X.	Please select
0.20	3e-8	57	1611910_s_at	AY395745.1	similar to putative ethylene response factor ERF3b	-	9e-14	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.16	3e-8	57	1609990_at	CB009298	similar to putative ethylene response factor ERF3b	-	1e-13	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.10	1e-4	46	1621760_at	BQ794397	hypothetical protein LOC100241392	-	1e-8	At1g50640	ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3)	C.G.	S.X.	Please select
0.02	1e-1	36	1622386_at	BQ794629	hypothetical protein LOC100264172	-	9e-3	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.02	1e-1	36	1610196_at	CB970055	-	-	7e+0	Atmg00370	-	C.G.	S.X.	Please select
0.02	4e-1	34	1609060_s_at	BQ796122	hypothetical protein LOC100267123	-	4e-9	At1g01490	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.08	2e+0	32	1621080_at	CF568964	-	-	1e-18	At1g28360	ERF12 (ERF DOMAIN PROTEIN 12)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-5	50	Arabidopsis thaliana	At3g15210	820752	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	1e-20	101	Glycine max	Gma.6380.1.S1_at	CD405339	Ethylene-responsive element binding factor 4	-	4e-8	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.16	3e-3	42	Hordeum vulgare	Contig6636_at	Contig6636	-	-	4e-11	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.04	1e-2	42	Oryza sativa	Os04g0399800	9632.m03131	-	Pathogenesis-related genes transcriptionalactivator PTI5	7e-6	At5g13910	LEP (LEAFY PETIOLE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	4e-20	99	Populus trichocarpa	PtpAffx.108947.1.S1_at	DN484132	AP2/ERF domain-containing transcription factor	-	5e-4	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e-2	40	Triticum aestivum	Ta.28521.2.S1_at	BQ606769	-	-	1e+0	At3g18510	unknown protein	C.G.	S.X.	Please select
0.14	1e-8	59	Zea mays	Zm.12317.1.S1_at	AY106969.1	ethylene-responsive transcription factor 4	-	2e-12	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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