Gene omics information

Query gene ID	1617653_at
Gene name	hypothetical protein LOC100260671
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1617653_at	CA818371	hypothetical protein LOC100260671	-	5e-2	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	S.X.	H.G.	Please select
0.50	72.7	1620788_at	CF603169	similar to ferrodoxin NADP oxidoreductase	-	2e-17	At4g05390	ATRFNR1 (ROOT FNR 1)	S.X.	H.G.	Please select
0.50	72.7	1607858_at	CD719873	hypothetical protein LOC100249628	-	1e-77	At4g10730	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	S.X.	H.G.	Please select
0.50	72.7	1615136_at	CF206458.1	hypothetical protein LOC100255051	-	1e-68	At1g10290	ADL6 (DYNAMIN-LIKE PROTEIN 6)	S.X.	H.G.	Please select
0.36	50.7	1608950_at	CF606755	hypothetical protein LOC100251050	-	1e-6	At5g19200	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.17	18.2	1606778_at	CF607072	hypothetical protein LOC100261953	-	6e-30	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.8	99.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4	97.3	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.4	97.3	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.0	96.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.0	96.7	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	30	1621210_at	CB979564	hypothetical protein LOC100254184	-	2e-9	At1g68510	LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42)	C.G.	S.X.	Please select
0.04	4e+0	30	1616876_at	CF512794	hypothetical protein LOC100241896	-	1e-12	At3g27925	DEGP1 (DegP protease 1)	C.G.	S.X.	Please select
0.02	4e+0	30	1613799_at	CF517211	-	-	2e-6	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	C.G.	S.X.	Please select
0.03	4e+0	30	1612911_at	CB970238	hypothetical protein LOC100251046	-	6e-3	At3g22540	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	1610812_at	CD801696	hypothetical protein LOC100257302	-	5e-13	At1g54580	ACP2 (ACYL CARRIER PROTEIN 2)	C.G.	S.X.	Please select
0.01	4e+0	30	1606827_at	CF404781	hypothetical protein LOC100264594	-	0	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	C.G.	S.X.	Please select
0.03	4e+0	30	1606719_at	CF203686.1	-	-	6e-9	At1g54630	ACP3 (ACYL CARRIER PROTEIN 3)	C.G.	S.X.	Please select
0.03	4e+0	30	1606532_s_at	CD801696	hypothetical protein LOC100257302	-	5e-13	At1g54580	ACP2 (ACYL CARRIER PROTEIN 2)	C.G.	S.X.	Please select
0.01	1e+1	28	1622559_at	CF606481	hypothetical LOC100244512	-	9e-22	At1g42990	ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	38	Arabidopsis thaliana	At4g39280	830084	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	F:phenylalanine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMAFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.72103.1.S1_at	BE805644	-	-	1e-15	At4g37210	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HT07K23u_at	HT07K23u	-	-	1e+0	At5g19250	unknown protein	C.G.	S.X.	Please select
0.04	6e+0	32	Oryza sativa	OsAffx.3348.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	3e-4	46	Populus trichocarpa	PtpAffx.2360.3.S1_a_at	CX179099	hypothetical protein	-	2e-18	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.86906.1.S1_at	CA599095	-	-	3e+0	At3g49570	LSU3 (RESPONSE TO LOW SULFUR 3)	C.G.	S.X.	Please select
0.07	1e+0	32	Zea mays	ZmAffx.1016.1.A1_at	AI881482	Hypothetical protein LOC100194117	-	1e-2	At4g19985	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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