CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1617607_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 77.3 1617607_at CB918932 - - 3e-2 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) S.X. H.G.
0.44 64.1 1617721_at CF568847 - - 1e-76 At5g56030 HSP81-2 (HEAT SHOCK PROTEIN 81-2) S.X. H.G.
0.38 53.6 1613291_at CF972323.1 - - 4e-4 At3g13410 unknown protein S.X. H.G.
0.33 45.7 1606450_at CD712784 - - 2e-12 At3g20560 ATPDIL5-3 (PDI-LIKE 5-3) S.X. H.G.
0.29 37.7 1619724_at CA818237 - - 1e-23 At5g27640 TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) S.X. H.G.
0.18 19.4 1621365_at CK136934.1 - - 9e-69 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.2 98.8 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
5.6 98.4 GSM436390 V. riparia (VR, PI588259) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436347 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM436392 V. riparia (VR, PI588259) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436391 V. riparia (VR, PI588259) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1913 1614622_at CB910360 hypothetical protein LOC100258256 - 3e-2 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) C.G. S.X.
0.02 1e-1 36 1616107_s_at CB340793 hypothetical protein LOC100247246 - 5e-51 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) C.G. S.X.
0.02 1e-1 36 1611808_at CF205006.1 - - 2e-25 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) C.G. S.X.
0.02 6e-1 34 1611042_at CB348049 hypothetical protein LOC100244390 - 9e-5 At3g20270 lipid-binding serum glycoprotein family protein C.G. S.X.
0.02 2e+0 32 1621578_at BM437326 - - 1e-1 At2g33270 ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) C.G. S.X.
0.01 2e+0 32 1617562_at CF512363 hypothetical protein LOC100246010 - 5e-60 At4g14710 acireductone dioxygenase [iron(II)-requiring]/ metal ion binding C.G. S.X.
0.02 2e+0 32 1608972_at BM437326 hypothetical protein LOC100267873 - 1e-1 At2g33270 ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) C.G. S.X.
0.02 9e+0 30 1622570_at CF211647 hypothetical protein LOC100242690 - 5e-15 At5g65490 - C.G. S.X.
0.02 9e+0 30 1621756_at CA818430 hypothetical protein LOC100260561 - 1e-25 At1g61780 postsynaptic protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-2 40 Arabidopsis thaliana At4g17090 827419 CT-BMY (CHLOROPLAST BETA-AMYLASE) Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). - - - C.G. S.X.
0.40 1e-39 165 Glycine max Gma.6900.1.S1_at BE659171 - - 9e-3 At2g45880 BAM7 (BETA-AMYLASE 7) C.G. S.X.
0.05 1e-6 54 Hordeum vulgare Contig10917_at Contig10917 - - 5e-2 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) C.G. S.X.
0.05 4e-9 63 Oryza sativa Os01g0236800 CR280155 - Glycoside hydrolase, family 14 protein 3e+0 At1g08120 - C.G. S.X.
0.24 5e-8 59 Populus trichocarpa PtpAffx.56491.1.S1_at CV263162 hypothetical protein - 1e-4 At5g18670 BMY3 C.G. S.X.
0.04 2e-3 44 Triticum aestivum Ta.23312.1.S1_at CA745374 - - 2e-3 At3g23920 BAM1 (BETA-AMYLASE 1) C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.158.1.A1_at AI668130 - - 3e-1 At2g23400 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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