Gene omics information

Query gene ID	1617592_at
Gene name	hypothetical protein LOC100259923
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	77.3	1617592_at	CB971943	hypothetical protein LOC100259923	-	6e-3	At1g62990	KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)	S.X.	H.G.	Please select
0.60	81.9	1617653_at	CA818371	hypothetical protein LOC100260671	-	5e-2	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	S.X.	H.G.	Please select
0.50	72.7	1607858_at	CD719873	hypothetical protein LOC100249628	-	1e-77	At4g10730	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	S.X.	H.G.	Please select
0.50	72.7	1615136_at	CF206458.1	hypothetical protein LOC100255051	-	1e-68	At1g10290	ADL6 (DYNAMIN-LIKE PROTEIN 6)	S.X.	H.G.	Please select
0.47	67.7	1620179_at	CB912064	hypothetical protein LOC100241542 /// hypothetical protein LOC100261171	-	1e-53	At4g13020	MHK	S.X.	H.G.	Please select
0.43	61.5	1620788_at	CF603169	similar to ferrodoxin NADP oxidoreductase	-	2e-17	At4g05390	ATRFNR1 (ROOT FNR 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.9	99.5	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.9	97.9	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.4	97.3	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.3	97.2	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.2	94.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	1614139_at	CF209997	-	-	2e+0	At5g23550	-	C.G.	S.X.	Please select
0.02	5e-1	34	1622490_at	CF208094	hypothetical protein LOC100262793	-	6e-1	At1g68490	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	1615201_at	CF415287	hypothetical protein LOC100257854	-	2e-4	At3g22120	CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN)	C.G.	S.X.	Please select
0.03	5e-1	34	1608060_at	CF210997	-	-	2e-1	At2g01420	PIN4 (PIN-FORMED 4)	C.G.	S.X.	Please select
0.03	5e-1	34	1607162_s_at	CF512517	-	-	3e+0	At2g30570	PSBW (PHOTOSYSTEM II REACTION CENTER W)	C.G.	S.X.	Please select
0.02	2e+0	32	1622043_at	CF211984	-	-	1e+0	At1g10100	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1619419_at	CB349553	hypothetical protein LOC100242138	-	9e-34	At1g77290	tetrachloro-p-hydroquinone reductive dehalogenase-related	C.G.	S.X.	Please select
0.02	2e+0	32	1619175_at	CF513465	-	-	9e-2	At3g58320	-	C.G.	S.X.	Please select
0.03	2e+0	32	1611253_at	CD798640	-	-	2e-1	At1g75060	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	6e-3	42	Arabidopsis thaliana	At1g62990	842602	KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)	Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis. Mutants have moderately irregular xylem development. Expression of this gene is upregulated by SND1 and MYB46.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	2e-12	73	Glycine max	GmaAffx.478.2.S1_at	BU763963	-	-	2e-38	At1g62990	KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)	C.G.	S.X.	Please select
0.02	7e-1	34	Hordeum vulgare	Contig18282_at	Contig18282	-	-	8e-2	At1g15840	unknown protein	C.G.	S.X.	Please select
0.04	3e-3	44	Oryza sativa	Os03g0123500	AK060316.1	-	Homeodomain transcription factor KNAT7	1e-5	At1g62990	KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.50640.1.A1_at	CV238485	-	-	1e+1	At4g16140	proline-rich family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e+0	32	Triticum aestivum	TaAffx.83851.1.S1_at	CA649572	-	-	5e-1	At3g13227	serine-rich protein-related	C.G.	S.X.	Please select
0.02	7e-1	34	Zea mays	Zm.9300.1.A1_at	BM267911	-	-	9e-2	At3g47180	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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