CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1617589_at

Gene name hypothetical protein LOC100251624

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 80.6 1617589_at CF213123 hypothetical protein LOC100251624 - 4e+0 At5g17710 EMB1241 (embryo defective 1241) S.X. H.G.
0.43 61.5 1614975_at CD799759 hypothetical protein LOC100264828 - 2e-1 At5g14440 - S.X. H.G.
0.40 57.7 1606514_at CD799006 hypothetical protein LOC100256196 - 3e-4 At4g10265 wound-responsive protein, putative S.X. H.G.
0.16 16.7 1607146_at CK138255.1 hypothetical LOC100266416 - 8e-2 At1g13550 unknown protein S.X. H.G.
0.09 9.4 1614502_at CF213530 hypothetical protein LOC100267863 - 2e-19 At4g36220 FAH1 (FERULIC ACID 5-HYDROXYLASE 1) S.X. H.G.
0.07 7.8 1611611_at CB980376 hypothetical protein LOC100259980 - 1e-1 At1g72610 GER1 (GERMIN-LIKE PROTEIN 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.8 100.0 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.5 99.8 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
12.8 99.8 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
11.9 99.8 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.8 99.7 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
10.8 99.7 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
7.4 99.2 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
6.7 99.0 GSM436406 V. riparia (VR, PI588259) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.9 98.6 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.8 98.6 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 34 1618117_at CB979124 - - 3e+0 At3g44310 NIT1 C.G. S.X.
0.03 1e+0 32 1622501_at BQ794835 - - 1e+0 At4g23870 unknown protein C.G. S.X.
0.03 1e+0 32 1618650_a_at CF210998 hypothetical protein LOC100250708 - 1e+0 Atmg00450 - C.G. S.X.
0.03 1e+0 32 1609852_at BQ794835 hypothetical protein LOC100246370 - 1e+0 At4g23870 unknown protein C.G. S.X.
0.02 5e+0 30 1622757_at CF510915 hypothetical protein LOC100253200 - 8e-6 At1g65580 FRA3 (FRAGILE FIBER3) C.G. S.X.
0.03 5e+0 30 1620923_at CF413730 hypothetical protein LOC100241746 - 4e-1 At1g32928 unknown protein C.G. S.X.
0.01 5e+0 30 1620296_at CF414668 hypothetical protein LOC100266601 - 5e-2 At1g66130 oxidoreductase N-terminal domain-containing protein C.G. S.X.
0.01 5e+0 30 1617275_at CF514442 hypothetical protein LOC100248351 - 3e+0 At5g03995 unknown protein C.G. S.X.
0.02 5e+0 30 1612690_at CB972604 - - 2e-19 At1g15030 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 Arabidopsis thaliana At5g17710 831638 EMB1241 (embryo defective 1241) F:protein binding, chaperone binding, protein homodimerization activity, adenyl-nucleotide exchange factor activity;P:embryonic development ending in seed dormancy, protein folding;C:thylakoid, chloroplast, chloroplast stroma;BOMFPAV - - - C.G. S.X.
0.03 6e+0 32 Glycine max PsAffx.CL2010Contig1_at PsAffx.CL2010Contig1 - - 5e+0 At5g27020 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig21914_at Contig21914 - - 5e-2 At1g64130 unknown protein C.G. S.X.
0.03 8e+0 32 Oryza sativa Os06g0677600 AK063252.1 - Small nuclear-like ribonucleoprotein domaincontaining protein 1e+0 At3g01010 UDP-glucose/GDP-mannose dehydrogenase family protein C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.157889.2.S1_at BU882182 hypothetical protein - 7e-1 At2g31040 ATP synthase protein I -related C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.106690.1.S1_x_at CA713555 - - 8e-1 At5g19190 unknown protein C.G. S.X.
0.04 4e-1 34 Zea mays Zm.970.1.S1_at BE638646 hypothetical protein LOC100277398 - 9e-1 At2g43950 OEP37 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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