CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1617563_s_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.84 94.8 1617563_s_at CF415066 - - 2e-1 At5g27495 ion channel inhibitor S.X. H.G.
0.43 61.5 1620898_at CB976503 hypothetical protein LOC100266931 - 2e-2 At3g25400 - S.X. H.G.
0.27 34.0 1619820_s_at CA811381 hypothetical protein LOC100245630 - 8e-9 At4g26160 ACHT1 (ATYPICAL CYS HIS RICH THIOREDOXIN 1) S.X. H.G.
0.17 18.2 1622252_at CB972844 L-idonate dehydrogenase - 8e-21 At5g51970 sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative S.X. H.G.
0.15 15.6 1610689_at CB969755 hypothetical LOC100252368 - 8e-1 At1g63055 unknown protein S.X. H.G.
0.15 15.6 1617962_at CB344676 hypothetical protein LOC100250100 - 1e-10 At1g60010 unknown protein S.X. H.G.
0.07 7.8 1610176_at CB341974 hypothetical protein LOC100266842 - 9e-16 At4g36810 GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1) S.X. H.G.
0.06 6.8 1612940_at CF414199 hypothetical protein LOC100244154 - 8e-9 At2g38025 - S.X. H.G.
0.06 6.8 1613092_at CF511904 - - 6e+0 At3g24110 calcium-binding EF hand family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 97.8 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.7 96.2 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4 95.5 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
3.2 94.9 GSM299458 D_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0 94.2 GSM147699 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 28
3.0 94.2 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
3.0 94.2 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
3.0 94.2 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0 94.2 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0 94.2 GSM147693 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 22
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 983 1608553_at CF415066 - - 2e-1 At5g27495 ion channel inhibitor C.G. S.X.
0.04 3e-1 34 1614164_at CD802102 - - 3e+0 At1g59725 DNAJ heat shock protein, putative C.G. S.X.
0.02 1e+0 32 1615660_at CF215672 similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase - 1e-51 At4g27960 UBC9 (UBIQUITIN CONJUGATING ENZYME 9) C.G. S.X.
0.01 1e+0 32 1611279_s_at CB343789 - - 0 Atcg01010 - C.G. S.X.
0.02 1e+0 32 1607688_at CD802450 - - 3e+0 At2g27315 unknown protein C.G. S.X.
0.02 5e+0 30 1621774_at CD715831 - - 3e-5 At4g14720 PPD2 C.G. S.X.
0.04 5e+0 30 1621090_at CB978759 hypothetical protein LOC100262179 - 3e-30 At5g22330 RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) C.G. S.X.
0.02 5e+0 30 1619657_at CD719074 - - 1e-1 At1g53650 CID8 (CTC-INTERACTING DOMAIN 8) C.G. S.X.
0.02 5e+0 30 1618857_at CB341740 hypothetical protein LOC100260191 - 3e-9 At5g03345 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-1 36 Arabidopsis thaliana At5g27495 3770746 ion channel inhibitor Encodes a defensin-like (DEFL) family protein. - - - C.G. S.X.
0.04 1e+0 34 Glycine max PsAffx.psMA002xL20f_at PsAffx.psMA002xL20f - - 3e+0 At5g40960 unknown protein C.G. S.X.
0.04 5e-1 34 Hordeum vulgare rbaal1i15_s_at rbaal1i15 - - 2e+0 At2g40085 unknown protein C.G. S.X.
0.03 5e-1 36 Oryza sativa Os08g0208200 AK062824.1 - Peptidase aspartic family protein 1e+0 At1g29950 transcription factor/ transcription regulator C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.222637.1.S1_at pmrna40183 hypothetical protein - 4e-2 At5g19590 unknown protein C.G. S.X.
0.04 3e-1 36 Triticum aestivum TaAffx.92939.1.A1_at BJ240550 - - 8e-1 At1g50800 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.3731.2.A1_at CK347337 hypothetical protein LOC100275405 - 2e+1 At5g12310 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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