Gene omics information

Query gene ID	1617556_s_at
Gene name	proline-rich cell wall protein-like /// hypothetical protein LOC100245999
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1617556_s_at	BQ797260	proline-rich cell wall protein-like /// hypothetical protein LOC100245999	-	3e-2	At1g76930	ATEXT4 (EXTENSIN 4)	S.X.	H.G.	Please select
0.91	98.8	1621251_s_at	BQ795002	hypothetical protein LOC100265471	-	2e+1	Atmg00500	-	S.X.	H.G.	Please select
0.91	98.8	1608585_x_at	BQ797013	proline-rich cell wall protein-like	-	7e-7	At3g07910	-	S.X.	H.G.	Please select
0.83	94.6	1618595_at	BQ798258	hypothetical protein LOC100248440	-	5e-1	At4g10950	GDSL-motif lipase/hydrolase family protein	S.X.	H.G.	Please select
0.83	94.6	1615212_at	CF406027	ripening-related protein-like	-	8e+0	At5g64040	PSAN	S.X.	H.G.	Please select
0.67	87.9	1610418_at	BQ798078	hypothetical protein LOC100245385	-	8e-13	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.5	99.8	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
12.3	99.8	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
11.1	99.7	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.6	99.7	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.3	99.6	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
10.2	99.6	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
10.2	99.6	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.8	99.6	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
9.2	99.5	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
9.1	99.5	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.74	0	1285	1608585_x_at	BQ797013	proline-rich cell wall protein-like	-	7e-7	At3g07910	-	C.G.	S.X.	Please select
0.29	6e-115	412	1610524_s_at	CD798339	similar to HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding	-	1e-52	At3g12580	HSP70 (heat shock protein 70)	C.G.	S.X.	Please select
0.19	3e-98	357	1606825_s_at	CB981133	-	-	8e+0	At3g32905	unknown protein	C.G.	S.X.	Please select
0.40	2e-87	321	1619004_at	BQ795665	-	-	2e+1	At5g18040	unknown protein	C.G.	S.X.	Please select
0.03	1e-7	56	1621447_s_at	CF404909	hypothetical protein LOC100261458	-	1e-85	At3g26340	20S proteasome beta subunit E, putative	C.G.	S.X.	Please select
0.03	6e-7	54	1620931_at	CB915389	hypothetical LOC100243703	-	2e-2	At3g55940	phosphoinositide-specific phospholipase C, putative	C.G.	S.X.	Please select
0.03	6e-7	54	1619057_at	CD799697	hypothetical protein LOC100252925	-	1e-17	At1g56700	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please select
0.04	6e-7	54	1618861_s_at	CF604714	-	-	1e-9	At2g44730	transcription factor	C.G.	S.X.	Please select
0.03	6e-7	54	1617931_at	CF510771	hypothetical protein LOC100241028	-	4e-4	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-2	40	Arabidopsis thaliana	At1g76930	844028	ATEXT4 (EXTENSIN 4)	Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-1	36	Glycine max	GmaAffx.37152.1.S1_at	BM307869	-	-	3e+0	At4g10845	unknown protein	C.G.	S.X.	Please select
0.02	6e-2	38	Hordeum vulgare	Contig16568_s_at	Contig16568	-	-	1e+0	At1g49110	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	OsAffx.31113.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	34	Populus trichocarpa	PtpAffx.9055.7.A1_s_at	CV245812	hypothetical protein	-	3e+0	At5g48905	LCR12 (Low-molecular-weight cysteine-rich 12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-2	40	Triticum aestivum	Ta.12649.1.S1_at	BQ171952	-	-	2e+1	Atmg00980	-	C.G.	S.X.	Please select
0.03	5e-2	38	Zea mays	Zm.8373.1.S1_at	BM073875	-	-	1e+0	At1g72640	binding / catalytic	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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