CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1617538_at

Gene name hypothetical protein LOC100252692

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 93.6 1617538_at CF213742 hypothetical protein LOC100252692 - 1e+0 At5g17190 unknown protein S.X. H.G.
0.77 92.3 1616827_at BQ793335 hypothetical protein LOC100254067 - 6e-27 At4g24550 clathrin adaptor complexes medium subunit family protein S.X. H.G.
0.67 87.9 1614380_at CD797929 hypothetical protein LOC100267715 - 2e-1 At2g17770 ATBZIP27 S.X. H.G.
0.38 53.6 1609890_s_at CA817702 hypothetical protein LOC100252402 - 5e-53 At2g04520 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative S.X. H.G.
0.38 53.6 1616080_at CF511120 hypothetical protein LOC100254062 - 5e-13 At5g42970 COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) S.X. H.G.
0.27 34.0 1613829_at CF213502 hypothetical protein LOC100256716 - 6e-18 At1g57620 emp24/gp25L/p24 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.6 92.5 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.3 90.7 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM436420 V. riparia (VR, PI588259) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM287889 Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM287896 Pink soft berry C27 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM436419 V. riparia (VR, PI588259) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436418 V. riparia (VR, PI588259) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM287895 Pink soft berry B13 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287887 Green soft berry C23 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 5e-22 103 1622392_at CF202961.1 hypothetical protein LOC100264712 - 5e-6 At5g17190 unknown protein C.G. S.X.
0.21 3e-11 67 1617108_x_at CF206749.1 - - 4e-1 At1g12880 atnudt12 (Arabidopsis thaliana Nudix hydrolase homolog 12) C.G. S.X.
0.03 1e-1 36 1618171_s_at BQ792407 zeaxanthin epoxidase - 3e-1 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) C.G. S.X.
0.03 1e-1 36 1606913_at BQ792407 zeaxanthin epoxidase - 3e-1 At5g65080 MAF5 (MADS AFFECTING FLOWERING 5) C.G. S.X.
0.02 4e-1 34 1607039_at CF205573.1 - - 2e+0 At1g32975 unknown protein C.G. S.X.
0.02 2e+0 32 1617276_at CF207725 hypothetical protein LOC100243332 - 2e-7 At2g37570 SLT1 (sodium- and lithium-tolerant 1) C.G. S.X.
0.01 2e+0 32 1615787_at BQ797242 similar to elongation factor 2 - 2e-168 At1g56070 LOS1 C.G. S.X.
0.03 7e+0 30 1622014_at CF404401 hypothetical protein LOC100249487 - 2e-2 At1g76640 calmodulin-related protein, putative C.G. S.X.
0.02 7e+0 30 1621844_at CF205446.1 hypothetical protein LOC100253011 - 7e-3 At1g76920 F-box family protein (FBX3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e+0 34 Arabidopsis thaliana At5g17190 831583 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P - - - C.G. S.X.
0.36 3e-27 123 Glycine max GmaAffx.89129.1.A1_s_at CK605595 - - 2e-5 At3g03160 unknown protein C.G. S.X.
0.11 3e-18 91 Hordeum vulgare EBed01_SQ002_O23_s_at EBed01_SQ002_O23 - - 4e-6 At3g03160 unknown protein C.G. S.X.
0.07 3e-9 63 Oryza sativa Os.7229.1.S1_at - - - 0 C.G. S.X.
0.26 1e-10 67 Populus trichocarpa PtpAffx.18382.1.S1_at CV250437 hypothetical protein - 4e-4 At5g17190 unknown protein C.G. S.X.
0.07 7e-18 91 Triticum aestivum Ta.18024.1.S1_at BJ239902 - - 9e-6 At3g03160 unknown protein C.G. S.X.
0.06 4e-11 67 Zea mays Zm.6784.2.A1_at CK347672 erwinia induced protein 2 - 1e-2 At3g03160 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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