CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1617483_at

Gene name hypothetical protein LOC100267019

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 89.5 1617483_at CD799044 hypothetical protein LOC100267019 - 1e+0 At2g04170 meprin and TRAF homology domain-containing protein / MATH domain-containing protein S.X. H.G.
0.77 92.3 1617596_at CF201215.1 hypothetical protein LOC100264999 - 1e+0 At4g32590 ferredoxin-related S.X. H.G.
0.73 90.8 1613603_at CF211665 hypothetical protein LOC100248706 - 1e-7 At1g47670 amino acid transporter family protein S.X. H.G.
0.60 81.9 1610600_at CA813949 hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829 - 3e-1 At3g08580 AAC1 (ADP/ATP CARRIER 1) S.X. H.G.
0.36 50.7 1609744_at CF203760.1 hypothetical protein LOC100240811 /// hypothetical protein LOC100263073 - 2e+0 At3g42630 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.33 45.7 1608172_at CD799315 - - 1e-2 At2g18050 HIS1-3 (HISTONE H1-3) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.3 100.0 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
20.8 99.9 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
13.2 99.8 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
9.3 99.6 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.3 99.4 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.3 98.2 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
4.8 97.8 GSM299452 B_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6 97.6 GSM147681 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 10
4.2 97.1 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.1 96.9 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 32 1622302_s_at CF207602 hypothetical protein LOC100245459 - 2e-19 At5g66570 PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1) C.G. S.X.
0.03 1e+0 32 1622034_at CD715701 - - 1e+0 At5g60670 60S ribosomal protein L12 (RPL12C) C.G. S.X.
0.03 1e+0 32 1621509_at CF202845.1 - - 1e+0 At5g41071 unknown protein C.G. S.X.
0.03 1e+0 32 1620834_at CB970590 hypothetical protein LOC100253371 - 4e-1 At5g02520 - C.G. S.X.
0.02 1e+0 32 1619317_at CF516706 hypothetical protein LOC100250509 - 4e-125 At5g42270 VAR1 (VARIEGATED 1) C.G. S.X.
0.02 1e+0 32 1618397_at BQ792646 hypothetical protein LOC100262580 - 1e-56 At3g51130 unknown protein C.G. S.X.
0.03 1e+0 32 1614317_at CF201355.1 hypothetical protein LOC100245459 - 2e-2 At4g37230 oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative C.G. S.X.
0.02 1e+0 32 1613976_at BQ796549 similar to RNA binding protein-like protein - 4e-2 At5g04600 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.03 1e+0 32 1611648_at CD718429 - - 5e+0 At3g05540 - C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At2g04170 814954 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVA - - - C.G. S.X.
0.14 2e-8 59 Glycine max Gma.2602.1.S1_at BU577743 - - 8e-1 At4g09965 unknown protein C.G. S.X.
0.05 2e+0 32 Hordeum vulgare HB25J22r_x_at HB25J22r - - 9e+0 At5g04790 unknown protein C.G. S.X.
0.03 2e+0 34 Oryza sativa OsAffx.23622.1.S1_at - - - 0 C.G. S.X.
0.06 2e-8 59 Populus trichocarpa PtpAffx.126778.1.A1_at BP933057 - - 8e-2 At5g66710 protein kinase, putative C.G. S.X.
0.03 4e+0 32 Triticum aestivum TaAffx.89166.2.S1_at CA723788 - - 3e+0 At5g05990 mitochondrial glycoprotein family protein / MAM33 family protein C.G. S.X.
0.04 4e-1 34 Zea mays ZmAffx.210.1.A1_at AI670218 - - 8e-1 At5g52200 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage