CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1617476_at

Gene name hypothetical protein LOC100246888

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.43 61.5 1617476_at CB345793 hypothetical protein LOC100246888 - 8e-12 At2g42230 tubulin-specific chaperone C-related S.X. H.G.
0.67 87.9 1611345_at CD721525 similar to Os08g0326100 - 2e-2 At5g47790 forkhead-associated domain-containing protein / FHA domain-containing protein S.X. H.G.
0.55 77.3 1615337_at CF405202 hypothetical protein LOC100264826 - 1e+0 At2g44195 unknown protein S.X. H.G.
0.55 77.3 1614110_s_at CD801616 cullin 1 - 2e-19 At4g02570 ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) S.X. H.G.
0.40 57.7 1617845_at CD800649 hypothetical protein LOC100263968 - 4e-35 At2g38630 - S.X. H.G.
0.35 48.5 1613769_at CB970019 hypothetical protein LOC100265267 - 4e-48 At1g51690 ATB ALPHA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2.7 93.0 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436361 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436373 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436357 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 34 1613957_at CA818582 - - 2e+0 At3g28930 AIG2 (AVRRPT2-INDUCED GENE 2) C.G. S.X.
0.02 2e+0 32 1619056_at CB917774 hypothetical protein LOC100248590 - 2e-5 At1g11570 nuclear transport factor 2 (NTF2), putative C.G. S.X.
0.02 2e+0 32 1618554_at CF208496 hypothetical protein LOC100254355 - 2e-1 At5g62610 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 2e+0 32 1615659_at CF373840 hypothetical protein LOC100245075 - 2e-2 At1g01300 aspartyl protease family protein C.G. S.X.
0.03 2e+0 32 1614964_at CF404292 - - 3e+0 At3g47220 phosphoinositide-specific phospholipase C family protein C.G. S.X.
0.02 2e+0 32 1614856_at CD718534 hypothetical protein LOC100267892 - 4e-11 At5g20720 CPN20 (CHAPERONIN 20) C.G. S.X.
0.02 2e+0 32 1614456_at BQ797488 hypothetical protein LOC100247088 - 1e-15 At1g05500 NTMC2T2.1 C.G. S.X.
0.01 2e+0 32 1612995_at CD012259 - - 4e-18 At3g13340 WD-40 repeat family protein C.G. S.X.
0.02 8e+0 30 1622725_at CF513192 hypothetical protein LOC100260366 - 7e+0 At5g28490 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 8e-12 71 Arabidopsis thaliana At2g42230 818823 tubulin-specific chaperone C-related F:binding;P:biological_process unknown;C:cellular_component unknown;MOP - - - C.G. S.X.
0.30 5e-60 232 Glycine max Gma.16690.1.S1_at BQ611311 - - 9e-40 At3g57890 tubulin-specific chaperone C-related C.G. S.X.
0.07 4e-9 61 Hordeum vulgare Contig10540_at Contig10540 - - 7e-8 At3g57890 tubulin-specific chaperone C-related C.G. S.X.
0.06 1e-21 105 Oryza sativa Os06g0614300 AK070178.1 - Cyclase-associated protein domain containingprotein 2e-11 At3g57890 tubulin-specific chaperone C-related C.G. S.X.
0.46 2e-68 260 Populus trichocarpa PtpAffx.30949.1.S1_at CV259383 hypothetical protein - 2e-24 At2g42230 tubulin-specific chaperone C-related C.G. S.X.
0.05 3e-11 69 Triticum aestivum Ta.12738.1.S1_at BE493232 - - 1e-14 At3g57890 tubulin-specific chaperone C-related C.G. S.X.
0.03 8e-4 44 Zea mays Zm.4241.1.S1_at BM268717 - - 1e-12 At2g42230 tubulin-specific chaperone C-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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