CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1617470_s_at

Gene name similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1); amino acid transmembrane transporter

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 75.2 1617470_s_at BQ797931 similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1); amino acid transmembrane transporter - 6e-11 At1g48640 lysine and histidine specific transporter, putative S.X. H.G.
0.50 72.7 1608504_at BQ797231 hypothetical protein LOC100255960 - 5e-1 At4g17713 - S.X. H.G.
0.29 37.7 1619027_at CA818485 - - 7e-2 At4g39250 ATRL1 (ARABIDOPSIS RAD-LIKE 1) S.X. H.G.
0.20 22.4 1619513_at CA817243 hypothetical protein LOC100247939 - 4e-7 At2g33600 cinnamoyl-CoA reductase family S.X. H.G.
0.13 13.3 1621305_s_at CA814305 hypothetical protein LOC100257814 - 5e-7 At4g05530 IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1) S.X. H.G.
0.07 7.8 1613916_at CF404702 hypothetical protein LOC100250922 - 1e-24 At5g64410 OPT4 (OLIGOPEPTIDE TRANSPORTER 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.8 99.9 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
11.1 99.7 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
9.5 99.6 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
8.6 99.5 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
8.5 99.4 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
8.3 99.4 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
7.5 99.2 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
7.2 99.1 GSM147715 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 44
6.4 98.9 GSM147734 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 63
6.3 98.8 GSM147733 Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation 62
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 1e-160 565 1609198_at CF206153.1 - - 9e-2 At5g40780 LHT1 C.G. S.X.
0.01 9e-1 34 1621612_at CB969908 hypothetical protein LOC100243970 - 3e-36 At1g52150 ATHB-15 C.G. S.X.
0.01 9e-1 34 1616170_at BQ797746 hypothetical protein LOC100242801 - 1e-84 At1g14400 UBC1 (UBIQUITIN CARRIER PROTEIN 1) C.G. S.X.
0.01 9e-1 34 1615112_at CB003966 - - 3e-39 At1g64355 unknown protein C.G. S.X.
0.02 9e-1 34 1612508_at CB914120 - - 9e-5 At1g70330 ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1) C.G. S.X.
0.01 9e-1 34 1611346_at CB003966 hypothetical protein LOC100246730 - 3e-39 At1g64355 unknown protein C.G. S.X.
0.02 9e-1 34 1609598_at BQ800096 hypothetical protein LOC100245060 - 2e-11 At3g07630 ADT2 (arogenate dehydratase 2) C.G. S.X.
0.02 9e-1 34 1608734_at CB914120 hypothetical protein LOC100250206 - 9e-5 At1g70330 ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1) C.G. S.X.
0.02 9e-1 34 1606724_at CF215838 hypothetical protein LOC100247480 - 4e-9 At1g25530 lysine and histidine specific transporter, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 6e-11 69 Arabidopsis thaliana At1g48640 841286 lysine and histidine specific transporter, putative F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA - - - C.G. S.X.
0.19 1e-6 56 Glycine max GmaAffx.46129.1.S1_at BI892562 - - 5e-6 At5g40780 LHT1 C.G. S.X.
0.03 4e-4 46 Hordeum vulgare Contig15915_at Contig15915 - - 2e-3 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
0.10 5e-16 87 Oryza sativa Os08g0127100 AK065217.1 - Lysine and histidine specific transporter 3e-19 At5g40780 LHT1 C.G. S.X.
0.42 1e-55 218 Populus trichocarpa PtpAffx.201014.1.S1_at pmrna1991 lysine/histidine transporter - 5e-17 At1g67640 lysine and histidine specific transporter, putative C.G. S.X.
0.10 6e-17 89 Triticum aestivum Ta.3869.1.S1_at CA674403 - - 7e-14 At5g40780 LHT1 C.G. S.X.
0.18 6e-3 42 Zea mays Zm.17174.1.A1_at CO531239 hypothetical protein LOC100273979 - 2e-6 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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