Gene omics information

Query gene ID	1617462_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1617462_at	CB346202	-	-	5e-2	At1g73410	MYB54 (MYB DOMAIN PROTEIN 54)	S.X.	H.G.	Please select
0.29	37.7	1610589_at	CB979189	hypothetical protein LOC100248961	-	4e-23	At4g38040	exostosin family protein	S.X.	H.G.	Please select
0.10	10.3	1610261_at	BQ792431	hypothetical protein LOC100261508	-	6e-2	At1g60650	glycine-rich RNA-binding protein, putative	S.X.	H.G.	Please select
0.07	7.8	1619480_at	CF513488	hypothetical protein LOC100242124	-	2e-16	At1g31910	GHMP kinase family protein	S.X.	H.G.	Please select
0.03	4.2	1614753_at	CF415333	hypothetical protein LOC100241307	-	2e-4	At2g43090	aconitase C-terminal domain-containing protein	S.X.	H.G.	Please select
0.02	3.2	1621588_at	CB982967	hypothetical protein LOC100259735	-	6e-16	At2g33470	GLTP1 (glycolipid transfer protein 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.5	99.4	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
5.4	98.3	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.1	98.1	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.7	97.7	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
4.4	97.3	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
4.1	96.9	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.1	96.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
3.4	95.5	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	1e-70	264	1619031_at	CB976670	hypothetical protein LOC100266074	-	5e-10	At3g63140	CSP41A (CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA)	C.G.	S.X.	Please select
0.24	5e-21	99	1619085_at	CB350332	-	-	4e+0	Atmg00940	-	C.G.	S.X.	Please select
0.13	2e-11	67	1609473_at	CB346246	-	-	4e+0	At4g01670	unknown protein	C.G.	S.X.	Please select
0.07	7e-8	56	1606644_at	CB346836	-	-	4e+0	At3g17510	CIPK1 (CBL-INTERACTING PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.07	4e-3	40	1609454_at	CB349535	-	-	3e+0	At1g52343	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	34	1620004_x_at	CF204829.1	-	-	5e-3	At1g51080	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	34	1617756_at	CB981493	hypothetical protein LOC100253194	-	2e+1	At5g57560	TCH4 (Touch 4)	C.G.	S.X.	Please select
0.04	2e-1	34	1611907_at	CF209622	-	-	4e+0	At5g06570	hydrolase	C.G.	S.X.	Please select
0.03	2e-1	34	1611549_at	CA817419	hypothetical protein LOC100243262	-	6e-99	At1g09770	ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	38	Arabidopsis thaliana	At1g73410	843676	MYB54 (MYB DOMAIN PROTEIN 54)	Encodes a putative transcription factor that is a member of the R2R3-MYB family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.CL2421Contig1_s_at	PsAffx.CL2421Contig1	-	-	1e-2	At3g06090	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	Contig18858_at	Contig18858	-	-	3e+0	At3g06300	AT-P4H-2 (A. THALIANA P4H ISOFORM 2)	C.G.	S.X.	Please select
0.04	4e-1	36	Oryza sativa	Os03g0595200	NM_184956.1	-	Conserved hypothetical protein	3e-1	At3g51750	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e-2	38	Populus trichocarpa	PtpAffx.24787.2.S1_a_at	CV245768	hypothetical protein	-	2e-1	At5g03270	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-1	34	Triticum aestivum	TaAffx.104834.1.S1_at	CA744330	-	-	1e-2	At2g23820	metal-dependent phosphohydrolase HD domain-containing protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zea mays	ZmAffx.1394.1.S1_at	40794996-69	-	-	2e-1	At5g46013	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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