CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1617444_s_at

Gene name hypothetical protein LOC100243312

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 81.9 1617444_s_at CF373801 hypothetical protein LOC100243312 - 3e-4 At3g45140 LOX2 (LIPOXYGENASE 2) S.X. H.G.
0.53 75.2 1608892_at CF373801 hypothetical protein LOC100243312 - 3e-4 At3g45140 LOX2 (LIPOXYGENASE 2) S.X. H.G.
0.50 72.7 1622019_s_at CF204368.1 hypothetical protein LOC100243312 - 2e-1 At5g39950 ATTRX2 (THIOREDOXIN 2) S.X. H.G.
0.11 11.3 1606521_at CF371891 hypothetical protein LOC100256590 - 5e-1 At4g37140 MEE69 (MATERNAL EFFECT EMBRYO ARREST 69) S.X. H.G.
0.11 11.3 1622645_at CF208259 hypothetical protein LOC100245405 - 1e-83 At1g01050 AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1) S.X. H.G.
0.05 6.0 1612176_at CF212948 hypothetical protein LOC100250907 - 5e-23 At3g17940 aldose 1-epimerase family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.7 99.0 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
6.3 98.8 GSM436367 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
5.1 98.1 GSM436412 V. riparia (VR, PI588259) SD, 13h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
4.0 96.7 GSM287889 Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.8 96.4 GSM287896 Pink soft berry C27 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.8 96.4 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.7 96.2 GSM287894 Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.7 96.2 GSM287892 Pink soft berry C11 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.5 95.7 GSM436368 Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.94 0 2795 1608892_at CF373801 hypothetical protein LOC100243312 - 3e-4 At3g45140 LOX2 (LIPOXYGENASE 2) C.G. S.X.
0.26 3e-168 591 1622019_s_at CF204368.1 hypothetical protein LOC100243312 - 2e-1 At5g39950 ATTRX2 (THIOREDOXIN 2) C.G. S.X.
0.30 6e-92 337 1620945_at CF568893 - - 2e-1 At3g45140 LOX2 (LIPOXYGENASE 2) C.G. S.X.
0.01 1e+0 34 1618545_a_at CB346750 hypothetical LOC100265979 - 2e-50 At1g12270 stress-inducible protein, putative C.G. S.X.
0.01 1e+0 34 1616231_s_at CB970587 hypothetical protein LOC100243340 - 1e-19 At4g25740 40S ribosomal protein S10 (RPS10A) C.G. S.X.
0.01 1e+0 34 1614552_at CB978862 hypothetical protein LOC100243178 - 3e-30 At3g61610 aldose 1-epimerase family protein C.G. S.X.
0.02 1e+0 34 1613941_at CA818531 hypothetical protein LOC100251097 - 2e+0 At1g65390 ATPP2-A5 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2 A5) C.G. S.X.
0.01 1e+0 34 1613154_at CB346750 hypothetical LOC100265979 - 2e-50 At1g12270 stress-inducible protein, putative C.G. S.X.
0.01 1e+0 34 1607952_at CF372631 hypothetical protein LOC100250523 - 3e-8 At1g28440 HSL1 (HAESA-Like 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-4 48 Arabidopsis thaliana At3g45140 823650 LOX2 (LIPOXYGENASE 2) Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection. - - - C.G. S.X.
0.22 3e-20 101 Glycine max Gma.9399.1.S1_at CD390357 - - 6e-4 At3g45140 LOX2 (LIPOXYGENASE 2) C.G. S.X.
0.03 2e+0 34 Hordeum vulgare HVSMEg0005M23r2_at HVSMEg0005M23r2 - - 2e-1 At3g57730 protein kinase, putative C.G. S.X.
0.01 2e+0 36 Oryza sativa OsAffx.23389.1.S1_at - - - 0 C.G. S.X.
0.20 5e-28 127 Populus trichocarpa PtpAffx.213797.1.S1_at pmrna26930 hypothetical protein - 4e-4 At3g45140 LOX2 (LIPOXYGENASE 2) C.G. S.X.
0.01 7e-2 40 Triticum aestivum Ta.1047.2.S1_a_at BJ238886 - - 4e+0 At2g21030 - C.G. S.X.
0.01 2e+0 34 Zea mays Zm.5876.1.A1_at AI657475 hypothetical protein LOC100216797 - 1e+0 At5g24520 TTG1 (TRANSPARENT TESTA GLABRA 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage