Gene omics information

Query gene ID	1617399_at
Gene name	hypothetical protein LOC100262132
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.6	1617399_at	CB342525	hypothetical protein LOC100262132	-	5e-21	At5g17790	VAR3 (VARIEGATED 3)	S.X.	H.G.	Please select
0.73	90.8	1618798_s_at	CF213901	hypothetical protein LOC100243733	-	2e-20	At3g10670	ATNAP7	S.X.	H.G.	Please select
0.70	88.6	1607811_at	CF212657	hypothetical protein LOC100251024	-	1e-75	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	S.X.	H.G.	Please select
0.68	88.0	1622619_at	BQ799372	hypothetical protein LOC100252967	-	4e-7	At3g60210	chloroplast chaperonin 10, putative	S.X.	H.G.	Please select
0.62	83.3	1606882_at	CF511462	hypothetical protein LOC100259086	-	5e-4	At1g45170	unknown protein	S.X.	H.G.	Please select
0.57	79.8	1616948_at	CB972594	similar to putative tryptophanyl-tRNA synthetase	-	6e-12	At2g25840	OVA4 (ovule abortion 4)	S.X.	H.G.	Please select
0.55	77.3	1618995_at	CF373614	hypothetical protein LOC100261804	-	2e-6	At4g25370	Clp amino terminal domain-containing protein	S.X.	H.G.	Please select
0.51	73.2	1609111_at	CF207933	hypothetical protein LOC100263832	-	2e-93	At3g13470	chaperonin, putative	S.X.	H.G.	Please select
0.50	72.7	1612007_at	BM437534	hypothetical protein LOC100246556	-	1e-10	At1g23360	UbiE/COQ5 methyltransferase family protein	S.X.	H.G.	Please select
0.49	69.3	1615706_at	CA816068	hypothetical protein LOC100257450	-	1e-4	At1g44920	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	98.6	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
5.4	98.3	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
4.9	97.9	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
4.6	97.6	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3
4.6	97.6	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
4.5	97.5	GSM147691	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	20
3.7	96.2	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
3.7	96.2	GSM147703	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	32
3.5	95.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.3	95.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	34	1619495_at	CA818305	-	-	1e-4	At1g44920	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	1615706_at	CA816068	hypothetical protein LOC100257450	-	1e-4	At1g44920	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1621092_at	CF210623	hypothetical protein LOC100256288	-	5e+0	Atcg01080	-	C.G.	S.X.	Please select
0.04	1e+0	32	1621194_at	CF405928	-	-	1e-6	At5g04130	DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative	C.G.	S.X.	Please select
0.02	1e+0	32	1621098_at	CB975046	hypothetical protein LOC100245221	-	8e-13	At1g16900	sugar binding / transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.03	1e+0	32	1617253_at	CD007084	-	-	6e-3	At2g15270	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	1613424_at	CF516066	hypothetical protein LOC100267845	-	6e-3	At2g15270	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	1620254_at	CD713450	-	-	2e+0	At5g12990	CLE40 (CLAVATA3/ESR-RELATED 40)	C.G.	S.X.	Please select
0.03	5e+0	30	1618092_at	CF203576.1	-	-	4e+0	At2g05380	GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	5e-21	101	Arabidopsis thaliana	At5g17790	831647	VAR3 (VARIEGATED 3)	Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.25	8e-33	141	Glycine max	GmaAffx.69683.1.S1_at	CA799656	-	-	7e-9	At5g17790	VAR3 (VARIEGATED 3)	C.G.	S.X.	Please select
0.03	8e+0	30	Hordeum vulgare	Contig4157_s_at	Contig4157	-	-	1e-25	At1g60780	HAP13 (HAPLESS 13)	C.G.	S.X.	Please select
0.04	5e-1	36	Oryza sativa	OsAffx.8646.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	3e-51	202	Populus trichocarpa	Ptp.1746.1.A1_at	CV236183	hypothetical protein	-	2e+0	At5g17790	VAR3 (VARIEGATED 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	32	Triticum aestivum	TaAffx.66759.1.A1_at	BG904379	-	-	3e+0	At4g18692	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.13332.1.S1_at	AY105769.1	ribosomal protein L32 containing protein	-	2e-2	At1g69485	structural constituent of ribosome	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage