Gene omics information

Query gene ID	1617385_at
Gene name	hypothetical protein LOC100251722
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.3	1617385_at	CF513590	hypothetical protein LOC100251722	-	2e-87	At2g27020	PAG1	S.X.	H.G.	Please select
0.67	87.9	1619101_at	CB975563	hypothetical protein LOC100248761	-	4e-13	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	S.X.	H.G.	Please select
0.61	83.2	1618792_at	CB348194	-	-	1e-37	At1g61250	SC3 (SECRETORY CARRIER 3)	S.X.	H.G.	Please select
0.47	67.7	1612790_at	CF608251	hypothetical protein LOC100243027	-	1e-17	At1g61250	SC3 (SECRETORY CARRIER 3)	S.X.	H.G.	Please select
0.36	50.7	1620109_s_at	BQ796928	hypothetical protein LOC100243583	-	2e+0	At3g57930	unknown protein	S.X.	H.G.	Please select
0.33	45.7	1615074_at	BQ794896	hypothetical protein LOC100254966	-	3e-35	At1g51710	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.3	90.7	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.0	88.2	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	1613851_at	CD800992	hypothetical protein LOC100244739	-	2e+0	At4g08039	-	C.G.	S.X.	Please select
0.02	2e-1	36	1608133_at	CA809505	hypothetical protein LOC100244452	-	1e-33	At5g59370	ACT4 (ACTIN 4)	C.G.	S.X.	Please select
0.02	7e-1	34	1619421_at	CF204153.1	hypothetical protein LOC100258729	-	1e-10	At1g54350	ABC transporter family protein	C.G.	S.X.	Please select
0.02	7e-1	34	1616060_at	BM436906	hypothetical protein LOC100247072	-	7e-3	At3g18870	mitochondrial transcription termination factor-related / mTERF-related	C.G.	S.X.	Please select
0.02	7e-1	34	1612231_at	BM436906	-	-	7e-3	At3g18870	mitochondrial transcription termination factor-related / mTERF-related	C.G.	S.X.	Please select
0.02	3e+0	32	1622584_at	CF206482.1	hypothetical protein LOC100248604	-	3e-26	At2g16740	UBC29 (ubiquitin-conjugating enzyme 29)	C.G.	S.X.	Please select
0.02	3e+0	32	1620139_at	CB914494	-	-	1e-9	At3g07170	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.01	3e+0	32	1618699_at	CB913495	-	-	4e-5	At5g62810	PEX14	C.G.	S.X.	Please select
0.02	3e+0	32	1617452_at	CD715576	hypothetical protein LOC100242226	-	1e+0	At4g09840	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	2e-87	323	Arabidopsis thaliana	At2g27020	817244	PAG1	Encodes 20S proteasome subunit PAG1 (PAG1).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.56	2e-149	529	Glycine max	Gma.11323.1.S1_at	CD398788	-	-	6e-75	At2g27020	PAG1	C.G.	S.X.	Please select
0.39	3e-38	159	Hordeum vulgare	Contig3178_s_at	Contig3178	-	-	5e-35	At2g27020	PAG1	C.G.	S.X.	Please select
0.37	1e-49	198	Oryza sativa	Os01g0811100	AB026562.1	-	Proteasome subunit alpha type 3 (EC 3.4.25.1) (20Sproteasome alpha subunit G) (20S proteasome subunitalpha-7)	2e-22	At2g27020	PAG1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.54	4e-135	482	Populus trichocarpa	Ptp.1.1.S1_s_at	CV233772	hypothetical protein	-	3e-61	At2g27020	PAG1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	3e-24	113	Triticum aestivum	Ta.14393.1.S1_at	CK156758	-	-	8e-35	At2g27020	PAG1	C.G.	S.X.	Please select
0.44	4e-40	165	Zea mays	Zm.14302.2.A1_a_at	AY109645.1	proteasome subunit alpha type 3	-	9e-28	At2g27020	PAG1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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