CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1617381_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.87 95.2 1617381_at CF405888 - - 3e+0 At5g43430 ETFBETA S.X. H.G.
0.47 67.7 1620902_a_at CD801216 - - 6e-1 At1g67210 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein S.X. H.G.
0.41 58.7 1606688_at AF176655.1 ripening induced protein - 2e-1 At4g33750 - S.X. H.G.
0.37 51.7 1613984_at CD802317 hypothetical protein LOC100243930 - 7e-1 At2g22155 - S.X. H.G.
0.37 51.7 1609320_x_at CF202708.1 - - 2e-1 At4g28703 - S.X. H.G.
0.37 51.7 1622247_at CB001362 hypothetical protein LOC100244197 - 3e+0 At2g28800 ALB3 (ALBINO 3) S.X. H.G.
0.37 51.7 1618897_at CF405080 hypothetical protein LOC100242888 - 3e-1 At4g10920 KELP S.X. H.G.
0.36 50.7 1607190_at CB981263 - - 1e+0 At2g35480 unknown protein S.X. H.G.
0.35 48.5 1618737_x_at CF202021.1 - - 1e+0 At4g09650 ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE) S.X. H.G.
0.35 48.5 1621590_at CF203585.1 - - 9e-2 At1g10140 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.4 99.9 GSM147732 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 61
13.5 99.8 GSM147714 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 43
11.4 99.7 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
9.1 99.5 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
7.4 99.2 GSM147738 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 67
7.0 99.1 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
5.3 98.2 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
5.2 98.2 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
4.1 96.9 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.9 96.6 GSM147719 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 48
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-1 32 1620176_at CF209156 hypothetical protein LOC100264829 - 2e-3 At4g02450 glycine-rich protein C.G. S.X.
0.04 8e-1 32 1618321_at CB982883 hypothetical protein LOC100260152 - 1e-18 At1g71350 eukaryotic translation initiation factor SUI1 family protein C.G. S.X.
0.05 8e-1 32 1612904_at CF203982.1 - - 2e-1 At5g14330 unknown protein C.G. S.X.
0.03 8e-1 32 1612795_at CD797772 hypothetical protein LOC100245736 - 4e-8 At4g39700 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.03 8e-1 32 1610749_at CB339256 hypothetical protein LOC100250629 - 1e-4 At4g08230 glycine-rich protein C.G. S.X.
0.02 8e-1 32 1607434_s_at CF513919 S-adenosylmethionine synthetase 4 - 2e-158 At4g01850 SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) C.G. S.X.
0.04 8e-1 32 1607597_at CF512500 - - 4e+0 Atmg00320 - C.G. S.X.
0.03 3e+0 30 1621560_at CB002361 - - 4e+0 At4g29820 CFIM-25 C.G. S.X.
0.04 3e+0 30 1621172_at CF516779 - - 4e+0 At5g52440 HCF106 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Arabidopsis thaliana At5g43430 834363 ETFBETA Encodes the electron transfer flavoprotein ETF beta, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF alpha is At1g50940) in Arabidopsis. Mutations of the ETF beta gene result in accelerated senescence and early death compared to wild-type during extended darkness. Also involved in the catabolism of leucine and chlorophyll degradation pathway activated during darkness-induced carbohydrate deprivation. - - - C.G. S.X.
0.05 4e+0 32 Glycine max GmaAffx.79482.1.A1_at CD395674 - - 2e+0 At3g13437 unknown protein C.G. S.X.
0.04 9e-2 36 Hordeum vulgare HVSMEi0015B11r2_s_at HVSMEi0015B11r2 - - 4e+0 At4g17920 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 5e+0 32 Oryza sativa OsAffx.1791.1.S1_at - - - 0 C.G. S.X.
0.05 1e+0 34 Populus trichocarpa Ptp.7645.1.S1_at DN497996 - - 2e-1 At3g48220 unknown protein C.G. S.X.
0.05 3e+0 32 Triticum aestivum TaAffx.22938.1.S1_at CA742921 - - 3e+0 At4g37660 ribosomal protein L12 family protein C.G. S.X.
0.03 1e+0 32 Zea mays Zm.16433.1.A1_at CF348894 - - 7e-2 At1g27860 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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