CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1617369_at

Gene name

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 79.8 1617369_at CB916656 - - 1e-3 At5g58700 phosphoinositide-specific phospholipase C family protein S.X. H.G.
0.67 87.9 1610946_at CF518886 hypothetical protein LOC100256249 - 2e-1 At1g31500 endonuclease/exonuclease/phosphatase family protein S.X. H.G.
0.60 81.9 1616669_at CF209174 hypothetical protein LOC100246496 - 2e-5 At4g00560 methionine adenosyltransferase regulatory beta subunit-related S.X. H.G.
0.60 81.9 1612088_at CF403659 hypothetical protein LOC100252369 - 6e-1 At4g08230 glycine-rich protein S.X. H.G.
0.43 61.5 1617158_at CB920605 hypothetical protein LOC100251931 - 4e-17 At5g19630 unknown protein S.X. H.G.
0.14 14.4 1620135_at CF518577 similar to putative isopropylmalate synthase - 9e-2 At1g74040 IMS1 (2-ISOPROPYLMALATE SYNTHASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.9 97.9 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
3.5 95.7 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.5 95.7 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
3.4 95.5 GSM147727 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 56
3.3 95.2 GSM147730 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 59
3.1 94.6 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1 94.6 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.9 93.8 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7 93.0 GSM147705 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation 34
2.6 92.5 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1015 1613552_at CB916656 hypothetical LOC100243703 - 1e-3 At5g58700 phosphoinositide-specific phospholipase C family protein C.G. S.X.
0.04 7e-2 36 1607756_s_at CF519234 hypothetical protein LOC100241574 - 3e-40 At3g08510 ATPLC2 (PHOSPHOLIPASE C 2) C.G. S.X.
0.03 1e+0 32 1619509_at CB344814 - - 6e+0 At4g26030 transcription factor C.G. S.X.
0.03 1e+0 32 1617468_at CA814578 hypothetical protein LOC100252029 - 9e-2 At1g17860 trypsin and protease inhibitor family protein / Kunitz family protein C.G. S.X.
0.02 1e+0 32 1614605_at CB002479 - - 2e+0 At4g00620 tetrahydrofolate dehydrogenase/cyclohydrolase, putative C.G. S.X.
0.03 1e+0 32 1613700_at CD717961 hypothetical protein LOC100243012 - 3e-29 At5g23290 PDF5 (PREFOLDIN 5) C.G. S.X.
0.02 1e+0 32 1612080_at CA817072 hypothetical protein LOC100263247 - 3e-2 At1g20770 unknown protein C.G. S.X.
0.02 1e+0 32 1610829_at CB002479 - - 2e+0 At4g00620 tetrahydrofolate dehydrogenase/cyclohydrolase, putative C.G. S.X.
0.03 1e+0 32 1610792_at CD714708 - - 1e-6 At3g08510 ATPLC2 (PHOSPHOLIPASE C 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 44 Arabidopsis thaliana At5g58700 835984 phosphoinositide-specific phospholipase C family protein F:phospholipase C activity, phosphoinositide phospholipase C activity, phosphoric diester hydrolase activity;P:signal transduction, intracellular signaling cascade, lipid metabolic process;C:plasma membrane;MFOP - - - C.G. S.X.
0.05 9e-2 38 Glycine max HgAffx.792.1.S1_at CK351898 - - 5e-1 At4g35500 protein kinase family protein C.G. S.X.
0.05 1e-1 36 Hordeum vulgare Contig24334_at Contig24334 - - 3e-1 At3g08510 ATPLC2 (PHOSPHOLIPASE C 2) C.G. S.X.
0.03 2e+0 34 Oryza sativa Os12g0562400 AJ276277.2 - Phospholipase C (Fragment) 1e-11 At2g40116 phosphoinositide-specific phospholipase C family protein C.G. S.X.
0.07 6e-3 42 Populus trichocarpa PtpAffx.918.1.S1_at CV262846 hypothetical protein - 9e-28 At3g08510 ATPLC2 (PHOSPHOLIPASE C 2) C.G. S.X.
0.04 4e+0 32 Triticum aestivum Ta.4163.1.A1_at BJ265783 - - 5e+0 At5g18940 Mo25 family protein C.G. S.X.
0.03 7e+0 30 Zea mays Zm.9967.1.A1_at BM350301 - - 9e-2 At5g26060 S1 self-incompatibility protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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