Gene omics information

Query gene ID	1617342_at
Gene name	hypothetical protein LOC100250363
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	79.8	1617342_at	CF605608	hypothetical protein LOC100250363	-	2e-8	At4g27000	ATRBP45C	S.X.	H.G.	Please select
0.50	72.7	1622579_at	CF212817	hypothetical protein LOC100262291	-	3e-11	At5g09850	transcription elongation factor-related	S.X.	H.G.	Please select
0.46	66.5	1620772_at	CF607066	hypothetical protein LOC100252015	-	3e-26	At5g53620	unknown protein	S.X.	H.G.	Please select
0.43	61.5	1618594_at	CD720244	hypothetical protein LOC100267905	-	2e-21	At4g33060	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	S.X.	H.G.	Please select
0.31	41.3	1612774_at	CF210198	hypothetical protein LOC100261536	-	2e+0	At5g40900	unknown protein	S.X.	H.G.	Please select
0.19	20.9	1616242_at	CF213196	hypothetical protein LOC100263350	-	2e-1	At4g18500	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	97.5	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.8	96.4	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-5	46	1609740_at	BQ794791	hypothetical protein LOC100262754	-	1e-1	At5g14440	-	C.G.	S.X.	Please select
0.04	1e-3	42	1619346_at	BQ798913	hypothetical protein LOC100255325	-	3e-4	At3g44750	HDA3 (HISTONE DEACETYLASE 3)	C.G.	S.X.	Please select
0.04	1e-3	42	1615242_at	CF372258	-	-	2e-1	At1g20780	SAUL1 (SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1)	C.G.	S.X.	Please select
0.01	8e-2	36	1622595_at	BQ795068	-	-	4e-3	At3g56860	UBP1 interacting protein 2a (UBA2a)	C.G.	S.X.	Please select
0.02	8e-2	36	1615137_at	CB347116	hypothetical protein LOC100256319	-	6e-159	At1g56340	CRT1 (CALRETICULIN 1)	C.G.	S.X.	Please select
0.04	3e-1	34	1617756_at	CB981493	hypothetical protein LOC100253194	-	2e+1	At5g57560	TCH4 (Touch 4)	C.G.	S.X.	Please select
0.03	3e-1	34	1617166_s_at	CA808041	ripening-related protein-like	-	4e-1	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.02	3e-1	34	1616712_at	BQ797208	hypothetical protein LOC100252724	-	3e-45	At1g74050	60S ribosomal protein L6 (RPL6C)	C.G.	S.X.	Please select
0.04	3e-1	34	1612008_at	CF604996	hypothetical protein LOC100243222	-	1e+0	At4g08790	nitrilase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-8	59	Arabidopsis thaliana	At4g27000	828808	ATRBP45C	F:RNA binding;P:unknown;C:unknown;MPFOBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-2	40	Glycine max	GmaAffx.93061.1.S1_at	CF808786	-	-	5e-6	At3g19130	ATRBP47B (RNA-binding protein 47B)	C.G.	S.X.	Please select
0.05	2e-3	42	Hordeum vulgare	Contig13380_at	Contig13380	-	-	2e-2	At4g19270	unknown protein	C.G.	S.X.	Please select
0.04	3e-2	40	Oryza sativa	Os02g0138100	9630.m00368	-	Conserved hypothetical protein	1e-2	At3g01120	MTO1 (METHIONINE OVERACCUMULATION 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e-8	59	Populus trichocarpa	Ptp.4651.1.S1_s_at	CA932228	-	-	8e-5	At4g27000	ATRBP45C	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	7e-2	38	Triticum aestivum	TaAffx.24874.1.S1_at	CA710703	-	-	7e+0	At3g09940	MDHAR (MONODEHYDROASCORBATE REDUCTASE)	C.G.	S.X.	Please select
0.07	1e-4	46	Zea mays	Zm.14069.1.S1_a_at	AI734511	hypothetical protein LOC100274401	-	2e-7	At1g49600	ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage