Gene omics information

Query gene ID	1617306_at
Gene name	similar to VPS24.1
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	88.6	1617306_at	CA808681	similar to VPS24.1	-	2e-79	At5g22950	VPS24.1	S.X.	H.G.	Please select
0.63	84.3	1621098_at	CB975046	hypothetical protein LOC100245221	-	8e-13	At1g16900	sugar binding / transferase, transferring glycosyl groups	S.X.	H.G.	Please select
0.46	66.5	1611865_at	CB970887	-	-	1e+0	At5g47100	CBL9	S.X.	H.G.	Please select
0.46	66.5	1619758_s_at	CB003371	hypothetical protein LOC100254356	-	1e+0	At3g01600	anac044 (Arabidopsis NAC domain containing protein 44)	S.X.	H.G.	Please select
0.46	66.5	1610856_at	CA809292	hypothetical protein LOC100247389	-	9e-27	At4g36960	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.42	60.1	1609968_at	CB972998	-	-	9e-5	At5g67630	DNA helicase, putative	S.X.	H.G.	Please select
0.38	53.6	1609066_at	CD802207	hypothetical protein LOC100241642	-	1e-7	At3g29270	ubiquitin-protein ligase	S.X.	H.G.	Please select
0.21	24.0	1613564_at	CB981989	hypothetical protein LOC100263482	-	5e-1	At5g37720	RNA and export factor-binding protein, putative	S.X.	H.G.	Please select
0.21	24.0	1606915_at	CD799700	hypothetical protein LOC100267395	-	9e-8	At4g15130	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	96.2	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287883	Green soft berry A23 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.8	93.4	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.6	92.5	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.6	92.5	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-8	57	1615700_at	CA809560	similar to VPS24.1	-	2e-8	At5g22950	VPS24.1	C.G.	S.X.	Please select
0.02	8e-2	36	1621626_at	BQ797187	hypothetical protein LOC100244502	-	8e-13	At5g57660	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.02	8e-2	36	1615266_at	CF372926	hypothetical protein LOC100246796	-	1e-14	At5g24930	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.03	8e-2	36	1606494_at	CB912016	hypothetical protein LOC100260130	-	8e-45	At3g17000	UBC32 (ubiquitin-conjugating enzyme 32)	C.G.	S.X.	Please select
0.04	3e-1	34	1620459_at	CF371933	-	-	5e-1	At4g39040	RNA binding	C.G.	S.X.	Please select
0.04	1e+0	32	1622112_at	CB345268	-	-	4e+0	At5g63990	3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative	C.G.	S.X.	Please select
0.02	1e+0	32	1620541_at	CF212449	hypothetical protein LOC100257177	-	5e-75	At3g53610	ATRAB8	C.G.	S.X.	Please select
0.02	1e+0	32	1617597_at	CF211441	hypothetical protein LOC100250442	-	4e-1	At2g21240	BPC4 (BASIC PENTACYSTEINE 4)	C.G.	S.X.	Please select
0.03	1e+0	32	1615530_s_at	CF201449.1	hypothetical protein LOC100256412	-	6e-9	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	2e-79	295	Arabidopsis thaliana	At5g22950	832359	VPS24.1	F:unknown;P:vesicle-mediated transport;C:ESCRT III complex;MPFOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	2e-37	157	Glycine max	GmaAffx.85330.1.S1_s_at	BE822748	-	-	2e-29	At5g22950	VPS24.1	C.G.	S.X.	Please select
0.17	6e-10	63	Hordeum vulgare	Contig5731_at	Contig5731	-	-	5e-4	At5g22950	VPS24.1	C.G.	S.X.	Please select
0.22	2e-12	73	Oryza sativa	Os.28775.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.61	2e-77	289	Populus trichocarpa	PtpAffx.217198.1.S1_at	pmrna32362	-	-	1e-99	At5g22950	VPS24.1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	1e-3	44	Triticum aestivum	Ta.7296.1.S1_at	BJ252648	-	-	4e-5	At3g45000	VPS24.2	C.G.	S.X.	Please select
0.04	2e-3	42	Zea mays	Zm.6583.1.A1_at	AY111761.1	hypothetical protein LOC100273289	-	2e-3	At3g45000	VPS24.2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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