Gene omics information

Query gene ID	1617280_s_at
Gene name	hypothetical protein LOC100258720
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1617280_s_at	CF373668	hypothetical protein LOC100258720	-	5e-3	At2g27385	unknown protein	S.X.	H.G.	Please select
0.80	93.6	1615898_at	CF404727	hypothetical protein LOC100247526	-	6e-2	At2g22100	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.80	93.6	1613074_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	S.X.	H.G.	Please select
0.80	93.6	1609418_s_at	CF568955	hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538	-	4e+0	At5g35375	unknown protein	S.X.	H.G.	Please select
0.80	93.6	1607851_at	CF415102	hypothetical protein LOC100266538	-	9e-2	At1g04660	glycine-rich protein	S.X.	H.G.	Please select
0.80	93.6	1611748_s_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	98.2	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
5.3	98.2	GSM436402	V. riparia (VR, PI588259) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.9	97.9	GSM436397	V. riparia (VR, PI588259) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.2	97.1	GSM436399	V. riparia (VR, PI588259) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.1	96.9	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.0	96.7	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436404	V. riparia (VR, PI588259) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.85	0	765	1619482_at	CK138138.1	-	-	5e-3	At2g27385	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	38	1621444_at	CB913275	hypothetical protein LOC100251040	-	1e+0	At3g22970	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	34	1620564_at	CA812876	-	-	1e-21	At5g01820	ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.02	4e-1	34	1616307_at	CB004173	-	-	4e-39	At4g31050	lipoyltransferase (LIP2p)	C.G.	S.X.	Please select
0.02	4e-1	34	1612506_at	CB004173	-	-	4e-39	At4g31050	lipoyltransferase (LIP2p)	C.G.	S.X.	Please select
0.03	4e-1	34	1612118_at	BQ796684	-	-	4e+0	At5g05930	guanylyl cyclase-related (GC1)	C.G.	S.X.	Please select
0.03	4e-1	34	1606849_at	CD800399	hypothetical protein LOC100264593	-	1e+0	At1g12080	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	1617759_at	CF403833	hypothetical protein LOC100266403	-	2e+0	At5g26970	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1615481_at	CB973026	hypothetical protein LOC100264345	-	3e-1	At1g30070	SGS domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-3	42	Arabidopsis thaliana	At2g27385	817283	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-5	50	Glycine max	Gma.768.1.S1_at	AW756870	-	-	1e-1	At2g27385	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	HVSMEg0017N16r2_at	HVSMEg0017N16r2	-	-	5e+0	At4g04650	-	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	Os.20437.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	8e-6	52	Populus trichocarpa	PtpAffx.127878.1.A1_at	CV238613	-	-	4e-1	At2g27385	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+1	30	Triticum aestivum	TaAffx.91829.1.S1_at	BJ301177	-	-	1e-1	At3g11773	electron carrier/ protein disulfide oxidoreductase	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.1116.1.S1_at	AI670638	-	-	5e+0	At5g55570	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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