Gene omics information

Query gene ID	1617272_at
Gene name	zinc finger RING-type protein-like
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.8	1617272_at	CF518232	zinc finger RING-type protein-like	-	1e-3	At3g54780	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.50	72.7	1618978_at	CF519087	zinc finger RING-type protein-like	-	1e+0	At1g23590	unknown protein	S.X.	H.G.	Please select
0.36	50.7	1619038_at	BQ800482	hypothetical protein LOC100259975	-	5e-12	At4g26510	ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase	S.X.	H.G.	Please select
0.33	45.7	1612860_at	CF210174	hypothetical protein LOC100261292	-	4e-54	At3g22950	ATARFC1 (ADP-ribosylation factor C1)	S.X.	H.G.	Please select
0.31	41.3	1610068_at	CD711769	hypothetical protein LOC100252154	-	2e-19	At2g36670	aspartyl protease family protein	S.X.	H.G.	Please select
0.29	37.7	1613210_at	CB970149	hypothetical protein LOC100258607	-	4e-50	At3g08720	S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.6	99.7	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
8.5	99.4	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.8	99.3	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.3	99.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
7.2	99.1	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.2	98.8	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.3	95.2	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	32	1621354_at	CD713565	-	-	3e-1	At1g09760	U2A' (U2 small nuclear ribonucleoprotein A)	C.G.	S.X.	Please select
0.02	1e+0	32	1620185_a_at	CB971924	hypothetical protein LOC100263951	-	2e+0	At5g62950	catalytic/ nucleotide binding	C.G.	S.X.	Please select
0.02	1e+0	32	1618687_at	CB345064	hypothetical protein LOC100245038	-	2e+0	At1g74790	catalytic	C.G.	S.X.	Please select
0.03	1e+0	32	1617579_at	CD713565	hypothetical protein LOC100252810	-	3e-1	At1g09760	U2A' (U2 small nuclear ribonucleoprotein A)	C.G.	S.X.	Please select
0.03	1e+0	32	1612653_at	CB003620	-	-	1e-16	At1g51980	mitochondrial processing peptidase alpha subunit, putative	C.G.	S.X.	Please select
0.02	1e+0	32	1611048_at	CB970151	hypothetical protein LOC100255990	-	2e-21	At4g32390	phosphate translocator-related	C.G.	S.X.	Please select
0.02	1e+0	32	1610276_s_at	CB346407	hypothetical protein LOC100244121	-	7e-6	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please select
0.03	1e+0	32	1608880_at	CB003620	hypothetical protein LOC100259973	-	1e-16	At1g51980	mitochondrial processing peptidase alpha subunit, putative	C.G.	S.X.	Please select
0.02	5e+0	30	1621975_at	CB912729	hypothetical protein LOC100254577	-	2e-2	At4g00200	DNA binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-3	44	Arabidopsis thaliana	At3g54780	824643	zinc finger (C3HC4-type RING finger) family protein	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;BMOPFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-2	38	Glycine max	GmaAffx.83957.1.S1_at	CA935876	-	-	1e-15	At2g31060	elongation factor family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig22198_at	Contig22198	-	-	4e+0	At5g05440	unknown protein	C.G.	S.X.	Please select
0.05	3e-5	50	Oryza sativa	Os02g0806700	AK072167.1	-	Retroelement pol polyprotein-like	7e-12	At2g38970	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	7e-18	91	Populus trichocarpa	PtpAffx.90642.2.A1_a_at	CK091213	hypothetical protein	-	1e-1	At5g60710	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.80679.1.S1_at	CA694042	-	-	4e+0	At5g67270	ATEB1C (microtubule end binding protein 1)	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.13485.1.A1_at	AY108893.1	-	-	3e-1	At5g16540	ZFN3 (ZINC FINGER NUCLEASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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