Gene omics information

Query gene ID	1617244_s_at
Gene name	hypothetical protein LOC100262315
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1617244_s_at	CB341989	hypothetical protein LOC100262315	-	1e-23	At4g22150	PUX3	S.X.	H.G.	Please select
0.67	87.9	1620419_at	BQ794848	hypothetical protein LOC100241492	-	5e-1	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	S.X.	H.G.	Please select
0.46	66.5	1612834_at	CF215135	hypothetical protein LOC100264546	-	2e-17	At1g13450	DNA binding protein GT-1	S.X.	H.G.	Please select
0.40	57.7	1613762_at	CF404411	hypothetical protein LOC100256306	-	5e-3	At2g04880	ZAP1 (ZINC-DEPENDENT ACTIVATOR PROTEIN-1)	S.X.	H.G.	Please select
0.40	57.7	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	S.X.	H.G.	Please select
0.29	37.7	1616340_at	CF515674	hypothetical protein LOC100259651	-	6e-9	At5g48160	OBE2 (OBERON2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.7	93.0	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436407	V. riparia (VR, PI588259) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	1619196_at	CB916796	-	-	1e-15	At1g12070	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.02	2e-1	36	1615377_at	CB916796	hypothetical protein LOC100254819	-	1e-15	At1g12070	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.02	7e-1	34	1617043_at	CF514790	hypothetical protein LOC100255806	-	4e+0	At5g65120	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	1616146_at	CF214045	hypothetical protein LOC100261624	-	5e+0	At5g28610	-	C.G.	S.X.	Please select
0.02	1e+1	30	1622531_at	CB834392	-	-	2e-6	At3g61700	unknown protein	C.G.	S.X.	Please select
0.01	1e+1	30	1622361_s_at	BQ799757	similar to cyclase	-	9e-31	At4g35220	cyclase family protein	C.G.	S.X.	Please select
0.02	1e+1	30	1622126_at	CF568916	-	-	7e-8	At4g08230	glycine-rich protein	C.G.	S.X.	Please select
0.02	1e+1	30	1621896_at	CF604980	hypothetical protein LOC100265858	-	1e-9	At3g05100	-	C.G.	S.X.	Please select
0.01	1e+1	30	1621730_at	CF511530	-	-	7e-19	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	1e-23	111	Arabidopsis thaliana	At4g22150	828304	PUX3	Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX3)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-42	174	Glycine max	Gma.4321.1.S1_at	BU548353	-	-	1e-17	At4g04210	PUX4	C.G.	S.X.	Please select
0.05	6e-18	91	Hordeum vulgare	Contig5816_s_at	Contig5816	-	-	1e-5	At4g22150	PUX3	C.G.	S.X.	Please select
0.05	2e-14	81	Oryza sativa	Os04g0464500	AK069067.1	-	UBX domain containing protein	7e-4	At4g22150	PUX3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	1e-33	145	Populus trichocarpa	PtpAffx.12427.1.S1_at	CF230851	hypothetical protein	-	4e-10	At4g22150	PUX3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	1e-17	91	Triticum aestivum	TaAffx.55558.1.S1_at	CA664402	-	-	5e-6	At4g22150	PUX3	C.G.	S.X.	Please select
0.04	2e-11	69	Zea mays	Zm.6103.2.S1_a_at	AY104019.1	UBA and UBX domain-containing protein /// UBA and UBX domain-containing protein	-	2e-1	At4g04210	PUX4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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