Gene omics information

Query gene ID	1617131_at
Gene name	hypothetical protein LOC100242326
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	80.6	1617131_at	CF511594	hypothetical protein LOC100242326	-	2e+0	At1g54095	unknown protein	S.X.	H.G.	Please select
0.80	93.6	1619715_at	CF207152	hypothetical protein LOC100243011	-	5e-39	At1g30470	SIT4 phosphatase-associated family protein	S.X.	H.G.	Please select
0.64	84.7	1619013_at	CF514808	hypothetical protein LOC100242671	-	3e-32	At1g03260	-	S.X.	H.G.	Please select
0.61	83.2	1622731_at	CF403287	hypothetical protein LOC100257054	-	8e-12	At3g55070	-	S.X.	H.G.	Please select
0.57	79.8	1610189_at	CF211002	hypothetical protein LOC100257691	-	4e+0	At5g47830	unknown protein	S.X.	H.G.	Please select
0.57	79.8	1615804_at	CF403733	-	-	4e-2	At5g65910	BSD domain-containing protein	S.X.	H.G.	Please select
0.47	67.7	1606735_at	CB970224	hypothetical protein LOC100249353	-	4e+0	At3g15420	unknown protein	S.X.	H.G.	Please select
0.45	64.6	1613731_at	CF513972	hypothetical protein LOC100248748	-	2e-5	At5g63840	RSW3 (RADIAL SWELLING 3)	S.X.	H.G.	Please select
0.44	64.1	1611870_at	CF414975	hypothetical protein LOC100247177	-	8e-152	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	S.X.	H.G.	Please select
0.41	58.7	1613905_at	CF210463	hypothetical protein LOC100254141	-	3e-13	At5g08160	ATPK3	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	93.4	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.7	93.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.6	92.5	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
2.6	92.5	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
2.2	89.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436392	V. riparia (VR, PI588259) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	34	1622188_at	CF373833	-	-	4e+0	At5g66800	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	1615347_at	CF518500	hypothetical protein LOC100243052	-	2e-20	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	C.G.	S.X.	Please select
0.02	5e-1	34	1611933_at	CB345450	hypothetical protein LOC100266645	-	2e-6	At3g52150	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	5e-1	34	1609726_at	CF211014	hypothetical protein LOC100267948	-	5e-1	At4g12720	NUDT7	C.G.	S.X.	Please select
0.02	2e+0	32	1619578_at	CB342051	hypothetical protein LOC100254366 /// hypothetical protein LOC100258319 /// hypothetical protein LOC100267392	-	6e-3	At3g14620	CYP72A8	C.G.	S.X.	Please select
0.02	2e+0	32	1618664_at	CA809027	-	-	4e-1	At5g13620	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	1615763_at	CD714998	-	-	8e+0	Atmg00240	-	C.G.	S.X.	Please select
0.03	2e+0	32	1613474_at	CF209807	-	-	7e-2	At3g27570	-	C.G.	S.X.	Please select
0.02	2e+0	32	1613015_at	CF609526	hypothetical protein LOC100261045	-	3e-1	At2g20410	activating signal cointegrator-related	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At1g54095	841848	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-2	40	Glycine max	Gma.15654.1.S1_at	CD401214	-	-	6e+0	At5g66300	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	C.G.	S.X.	Please select
0.02	3e+0	32	Hordeum vulgare	HV02E02u_at	HV02E02u	-	-	1e+0	At1g65170	ubiquitin carboxyl-terminal hydrolase family protein	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	OsAffx.31146.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	Ptp.8006.1.S1_s_at	BU831728	-	-	5e-1	At5g01480	DC1 domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.18480.2.S1_at	CA631011	-	-	3e+0	At1g12665	-	C.G.	S.X.	Please select
0.03	7e-1	34	Zea mays	Zm.10156.1.A1_a_at	BM381823	major pollen allergen Car b 1 isoforms 1A and 1B	-	5e+0	At4g35480	RHA3B	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage