CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID 1617120_s_at

Gene name hypothetical protein LOC100265095

Organism Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 94.6 1617120_s_at CF208320 hypothetical protein LOC100265095 - 1e+0 At4g18593 dual specificity protein phosphatase-related S.X. H.G.
0.71 89.5 1621931_at CF210459 hypothetical protein LOC100265095 - 1e-1 At3g50920 phosphatidic acid phosphatase-related / PAP2-related S.X. H.G.
0.59 80.6 1615933_at CF510942 hypothetical protein LOC100241901 - 1e+0 At5g17690 TFL2 (TERMINAL FLOWER 2) S.X. H.G.
0.50 72.7 1607566_s_at CF200894.1 hypothetical protein LOC100267479 - 3e-20 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) S.X. H.G.
0.44 64.1 1621899_at BQ796169 hypothetical protein LOC100245154 - 3e-23 At3g04870 ZDS (ZETA-CAROTENE DESATURASE) S.X. H.G.
0.36 50.7 1610743_s_at BQ796944 9,10[9',10']carotenoid cleavage dioxygenase - 2e-147 At3g63520 CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 97.8 GSM287894 Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
4.7 97.7 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
4.0 96.7 GSM287887 Green soft berry C23 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.7 96.2 GSM287884 Green soft berry C7 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.7 96.2 GSM287896 Pink soft berry C27 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM287895 Pink soft berry B13 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.6 96.0 GSM287893 Pink soft berry C12 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.4 95.5 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
3.4 95.5 GSM287881 Green soft berry B10 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.94 0 956 1609347_at CF208320 - - 1e+0 At4g18593 dual specificity protein phosphatase-related C.G. S.X.
0.47 6e-169 591 1621931_at CF210459 hypothetical protein LOC100265095 - 1e-1 At3g50920 phosphatidic acid phosphatase-related / PAP2-related C.G. S.X.
0.03 1e+0 32 1618381_at CF415255 hypothetical protein LOC100265039 - 1e+0 At3g17730 anac057 (Arabidopsis NAC domain containing protein 57) C.G. S.X.
0.02 1e+0 32 1617113_at BQ793599 hypothetical protein LOC100257592 - 1e-1 At5g15600 SP1L4 (SPIRAL1-LIKE4) C.G. S.X.
0.02 1e+0 32 1615806_at BQ800314 hypothetical protein LOC100246942 - 6e-4 At1g61930 unknown protein C.G. S.X.
0.02 5e+0 30 1622373_at CF516583 - - 4e-1 At4g25410 DNA binding / transcription factor C.G. S.X.
0.02 5e+0 30 1621643_at CF404242 hypothetical protein LOC100257364 - 5e-41 At5g42790 PAF1 C.G. S.X.
0.01 5e+0 30 1621283_at AF257777.1 H+-pyrophosphatase - 1e-93 At1g15690 AVP1 C.G. S.X.
0.03 5e+0 30 1621016_at CA817314 similar to transporter-related - 3e-10 At5g20380 PHT4 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At4g18593 827592 dual specificity protein phosphatase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP - - - C.G. S.X.
0.05 1e+0 34 Glycine max GmaAffx.849.3.A1_at BF424300 - - 4e+0 At1g67700 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare HVSMEa0016P03r2_at HVSMEa0016P03r2 - - 3e-1 At3g14870 unknown protein C.G. S.X.
0.04 8e+0 32 Oryza sativa OsAffx.24209.1.S1_at - - - 0 C.G. S.X.
0.05 1e+0 34 Populus trichocarpa PtpAffx.222401.1.S1_at pmrna39770 hypothetical protein - 4e-1 At1g51430 unknown protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.29938.1.S1_at CA632220 - - 6e-2 At3g49780 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) C.G. S.X.
0.03 3e+1 28 Zea mays Zm.8836.1.A1_a_at BM075841 - - 2e+1 At5g41660 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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