Gene omics information

Query gene ID	1617079_at
Gene name
Organism	Vitis vinifera

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	93.6	1617079_at	CB972040	-	-	4e-1	At3g26900	shikimate kinase family protein	S.X.	H.G.	Please select
0.73	90.8	1620204_at	BQ792129	-	-	8e-1	At1g20070	unknown protein	S.X.	H.G.	Please select
0.73	90.8	1612893_at	CF513602	hypothetical protein LOC100243553	-	2e-18	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	S.X.	H.G.	Please select
0.72	89.7	1615236_at	BQ796877	-	-	1e+0	At5g48595	-	S.X.	H.G.	Please select
0.60	81.9	1612460_s_at	CF207746	hypothetical protein LOC100245544	-	4e-20	At2g38270	CXIP2 (CAX-INTERACTING PROTEIN 2)	S.X.	H.G.	Please select
0.59	80.6	1607640_at	CF215061	hypothetical protein LOC100249595	-	1e-19	At1g65260	PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)	S.X.	H.G.	Please select
0.56	79.4	1610047_s_at	CF204118.1	-	-	1e-19	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	S.X.	H.G.	Please select
0.55	77.3	1621737_s_at	CB973303	hypothetical protein LOC100262728	-	3e-12	At3g47560	esterase/lipase/thioesterase family protein	S.X.	H.G.	Please select
0.50	72.7	1607285_s_at	CD013720	hypothetical protein LOC100262997	-	3e-54	At5g52520	OVA6 (OVULE ABORTION 6)	S.X.	H.G.	Please select
0.47	67.7	1610508_at	BQ794347	hypothetical protein LOC100253402	-	1e-9	At3g44620	protein tyrosine phosphatase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.8	97.8	GSM147687	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	16
3.9	96.6	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
3.4	95.5	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
3.3	95.2	GSM147705	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	34
3.3	95.2	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
3.3	95.2	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
3.2	94.9	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.2	94.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.1	94.6	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
3.0	94.2	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	1622466_at	CF414356	hypothetical protein LOC100247828	-	8e-107	At5g62690	TUB2	C.G.	S.X.	Please select
0.02	5e-1	34	1615695_at	CB836184	-	-	4e-1	At2g44420	protein N-terminal asparagine amidohydrolase family protein	C.G.	S.X.	Please select
0.02	5e-1	34	1611898_at	CB836184	-	-	4e-1	At2g44420	protein N-terminal asparagine amidohydrolase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1622659_at	CF405929	hypothetical protein LOC100250457	-	3e-11	At3g12050	Aha1 domain-containing protein	C.G.	S.X.	Please select
0.01	2e+0	32	1622644_at	CB007566	hypothetical protein LOC100250337	-	6e-172	At2g42520	DEAD box RNA helicase, putative	C.G.	S.X.	Please select
0.03	2e+0	32	1618555_at	CF203268.1	-	-	4e+0	At3g23600	dienelactone hydrolase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	1618308_at	CB975280	hypothetical protein LOC100247408	-	4e-16	At5g63770	ATDGK2 (Diacylglycerol kinase 2)	C.G.	S.X.	Please select
0.02	2e+0	32	1616704_at	CF213956	hypothetical protein LOC100262746	-	5e-28	At4g31180	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	C.G.	S.X.	Please select
0.03	2e+0	32	1614921_at	CB977965	hypothetical protein LOC100267097	-	4e+0	At4g33960	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	4e-1	36	Arabidopsis thaliana	At3g26900	822306	shikimate kinase family protein	F:shikimate kinase activity, ATP binding;P:aromatic amino acid family biosynthetic process;C:chloroplast stroma, chloroplast;BOPMAF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	9e-6	52	Glycine max	Gma.10078.1.S1_at	BE823706	-	-	3e+0	At4g26520	fructose-bisphosphate aldolase, cytoplasmic	C.G.	S.X.	Please select
0.03	1e+1	30	Hordeum vulgare	HVSMEm0005B11r2_x_at	HVSMEm0005B11r2	-	-	4e+0	At2g36020	HVA22J (HVA22-LIKE PROTEIN J)	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	Os06g0701400	AK121229.1	-	60S acidic ribosomal protein P3 (P1/P2-like) (P3A)	1e-1	At3g28560	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.200972.1.S1_at	pmrna1900	hypothetical protein	-	4e-9	At5g40490	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	Ta.25069.2.S1_at	CA606141	-	-	1e+0	At1g23980	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	7e-1	34	Zea mays	Zm.6293.1.A1_at	CF038760	hypothetical protein LOC100216905	-	4e+0	At5g08400	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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